Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   JZM58_RS03180 Genome accession   NZ_CP071797
Coordinates   699475..700098 (+) Length   207 a.a.
NCBI ID   WP_207984784.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694475..705098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS03165 (JZM58_03165) - 695183..697630 (-) 2448 WP_207984782.1 penicillin-binding protein 1A -
  JZM58_RS03170 (JZM58_03170) comM 697848..698912 (+) 1065 WP_207984783.1 pilus assembly protein PilM Machinery gene
  JZM58_RS03175 (JZM58_03175) - 698912..699478 (+) 567 WP_007952387.1 PilN domain-containing protein -
  JZM58_RS03180 (JZM58_03180) comO/pilO 699475..700098 (+) 624 WP_207984784.1 type 4a pilus biogenesis protein PilO Machinery gene
  JZM58_RS03185 (JZM58_03185) pilP 700095..700619 (+) 525 WP_207984785.1 pilus assembly protein PilP Machinery gene
  JZM58_RS03190 (JZM58_03190) pilQ 700634..702712 (+) 2079 WP_207984786.1 type IV pilus secretin PilQ Machinery gene
  JZM58_RS03195 (JZM58_03195) aroK 702717..703235 (+) 519 WP_045121685.1 shikimate kinase AroK -
  JZM58_RS03200 (JZM58_03200) aroB 703386..704486 (+) 1101 WP_011332082.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23077.41 Da        Isoelectric Point: 4.4620

>NTDB_id=478871 JZM58_RS03180 WP_207984784.1 699475..700098(+) (comO/pilO) [Pseudomonas fluorescens strain YK-310]
MKPSEWLDSLRNVDFNDLDTSNIGSWPPVVKGLAGGLLMVLVLALGYNFFISDLESQLETRREEETTLKEQFASKAHMAA
NLELYTQQMKEMENSFGVLLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQITVTGAYHDLATF
VSGVAGLPRIVTLHDFELAPASPEGGPKLRMSILAKTYRYNDKGLQK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=478871 JZM58_RS03180 WP_207984784.1 699475..700098(+) (comO/pilO) [Pseudomonas fluorescens strain YK-310]
ATGAAGCCGTCCGAGTGGCTGGACAGCCTGCGCAACGTCGATTTCAACGACCTCGACACCAGCAACATCGGCTCCTGGCC
GCCAGTGGTCAAAGGCCTGGCCGGCGGGCTGTTGATGGTGCTGGTGCTGGCGCTTGGCTATAACTTTTTCATCAGTGACC
TGGAGAGTCAGCTCGAAACCAGACGTGAGGAGGAAACCACTCTCAAGGAACAGTTCGCGAGCAAGGCGCACATGGCGGCC
AATCTGGAGCTGTACACCCAGCAGATGAAAGAGATGGAAAACTCGTTCGGCGTGCTGTTGCGGCAATTGCCCAGTGACAC
CGAGGTGCCGGGGTTGCTGGAAGACATCACGCGCACCGGGCTGGGCAGCGGTCTTGAGTTCGAAGAGATCAAACTGCTGC
CGGAGGTCACCCAGCAGTTCTACATCGAGCTGCCCATCCAGATCACCGTGACCGGTGCCTACCACGACCTCGCGACTTTC
GTCAGCGGCGTGGCCGGTTTGCCACGGATCGTCACTCTGCACGATTTCGAACTGGCGCCGGCCAGTCCCGAAGGCGGGCC
GAAGTTGCGCATGAGCATTCTCGCCAAGACCTACCGCTACAACGACAAGGGGCTGCAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

47.09

91.304

0.43
  pilO Acinetobacter baumannii D1279779

44.737

91.787

0.411
  pilO Legionella pneumophila strain ERS1305867

44.041

93.237

0.411