Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H9S87_RS06625 Genome accession   NZ_CP060799
Coordinates   1354025..1354303 (+) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain ONU 554     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349025..1359303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS06605 (H9S87_06605) - 1349339..1350958 (+) 1620 WP_034662692.1 ABC-F family ATP-binding cassette domain-containing protein -
  H9S87_RS06610 (H9S87_06610) - 1351195..1352427 (-) 1233 WP_095285099.1 aminopeptidase -
  H9S87_RS06615 (H9S87_06615) - 1352535..1352666 (-) 132 WP_003210922.1 protein YkpC -
  H9S87_RS06620 (H9S87_06620) mreBH 1352741..1353748 (-) 1008 WP_034662688.1 rod-share determining protein MreBH -
  H9S87_RS06625 (H9S87_06625) abrB 1354025..1354303 (+) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H9S87_RS06630 (H9S87_06630) - 1354448..1355758 (+) 1311 WP_034662683.1 ATP-binding protein -
  H9S87_RS06635 (H9S87_06635) - 1355763..1356599 (+) 837 WP_187704479.1 gamma-glutamylcyclotransferase -
  H9S87_RS06640 (H9S87_06640) - 1356637..1357305 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  H9S87_RS06645 (H9S87_06645) ade 1357569..1359299 (+) 1731 WP_095285100.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=478422 H9S87_RS06625 WP_034662686.1 1354025..1354303(+) (abrB) [Bacillus pumilus strain ONU 554]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=478422 H9S87_RS06625 WP_034662686.1 1354025..1354303(+) (abrB) [Bacillus pumilus strain ONU 554]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554