Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H9S87_RS04900 Genome accession   NZ_CP060799
Coordinates   1021127..1021705 (+) Length   192 a.a.
NCBI ID   WP_095284986.1    Uniprot ID   -
Organism   Bacillus pumilus strain ONU 554     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016127..1026705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS04880 (H9S87_04880) - 1016619..1017926 (-) 1308 Protein_914 globin-coupled sensor protein -
  H9S87_RS04885 (H9S87_04885) - 1018006..1019538 (-) 1533 WP_034663531.1 FAD-dependent oxidoreductase -
  H9S87_RS04890 (H9S87_04890) - 1019684..1020544 (+) 861 WP_095284985.1 SDR family oxidoreductase -
  H9S87_RS04895 (H9S87_04895) - 1020601..1020837 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  H9S87_RS04900 (H9S87_04900) comK 1021127..1021705 (+) 579 WP_095284986.1 competence protein ComK Regulator
  H9S87_RS04905 (H9S87_04905) - 1021874..1022980 (+) 1107 WP_034663522.1 D-TA family PLP-dependent enzyme -
  H9S87_RS04910 (H9S87_04910) - 1023335..1023817 (+) 483 WP_060595940.1 hypothetical protein -
  H9S87_RS04915 (H9S87_04915) - 1023850..1025289 (-) 1440 WP_034663517.1 PLP-dependent aminotransferase family protein -
  H9S87_RS04920 (H9S87_04920) - 1025435..1026604 (+) 1170 WP_034663515.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22374.48 Da        Isoelectric Point: 8.7996

>NTDB_id=478407 H9S87_RS04900 WP_095284986.1 1021127..1021705(+) (comK) [Bacillus pumilus strain ONU 554]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVIGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=478407 H9S87_RS04900 WP_095284986.1 1021127..1021705(+) (comK) [Bacillus pumilus strain ONU 554]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGGA
GCTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAATAGGAATTTCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609