Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J1N58_RS02285 Genome accession   NZ_CP071697
Coordinates   466779..467396 (-) Length   205 a.a.
NCBI ID   WP_004195218.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461779..472396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS02265 (J1N58_02265) - 462614..463447 (+) 834 WP_024377453.1 energy-coupling factor transporter transmembrane component T -
  J1N58_RS02270 (J1N58_02270) - 463607..463810 (+) 204 WP_004195223.1 cold-shock protein -
  J1N58_RS02275 (J1N58_02275) rsmG 463852..464565 (-) 714 WP_029175816.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  J1N58_RS02280 (J1N58_02280) pbp1a 464624..466798 (-) 2175 WP_161940612.1 penicillin-binding protein PBP1A -
  J1N58_RS02285 (J1N58_02285) recU 466779..467396 (-) 618 WP_004195218.1 Holliday junction resolvase RecU Machinery gene
  J1N58_RS02290 (J1N58_02290) - 467462..468001 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  J1N58_RS02295 (J1N58_02295) gpsB 468072..468407 (+) 336 WP_004195212.1 cell division regulator GpsB -
  J1N58_RS02305 (J1N58_02305) - 468969..470135 (+) 1167 WP_004195209.1 class I SAM-dependent RNA methyltransferase -
  J1N58_RS02310 (J1N58_02310) - 470145..471599 (+) 1455 WP_207560485.1 cell division site-positioning protein MapZ family protein -
  J1N58_RS02315 (J1N58_02315) - 471818..472300 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23735.31 Da        Isoelectric Point: 10.0312

>NTDB_id=478356 J1N58_RS02285 WP_004195218.1 466779..467396(-) (recU) [Streptococcus suis strain 1112S]
MVNYPHKVSKKINRTSPTSSQRVNFANRGMSFEAAINDSNQYYLAHGIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=478356 J1N58_RS02285 WP_004195218.1 466779..467396(-) (recU) [Streptococcus suis strain 1112S]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTACTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGGCATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAGGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
TATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTAAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.239

96.098

0.473