Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H9L17_RS10775 Genome accession   NZ_CP060711
Coordinates   2339883..2341151 (-) Length   422 a.a.
NCBI ID   WP_187569453.1    Uniprot ID   A0A7G9QQR0
Organism   Thermomonas brevis strain KACC 16975     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2334883..2346151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L17_RS10755 (H9L17_10750) secA 2335026..2337731 (+) 2706 WP_187569449.1 preprotein translocase subunit SecA -
  H9L17_RS10760 (H9L17_10755) mutT 2337939..2338328 (+) 390 Protein_2118 8-oxo-dGTP diphosphatase MutT -
  H9L17_RS10765 (H9L17_10760) coaE 2338331..2338939 (-) 609 WP_187569451.1 dephospho-CoA kinase -
  H9L17_RS10770 (H9L17_10765) - 2339001..2339864 (-) 864 WP_187569452.1 A24 family peptidase -
  H9L17_RS10775 (H9L17_10770) pilC 2339883..2341151 (-) 1269 WP_187569453.1 type II secretion system F family protein Machinery gene
  H9L17_RS10780 (H9L17_10775) pilB 2341162..2342886 (-) 1725 WP_187569454.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9L17_RS10785 (H9L17_10780) - 2343004..2343861 (+) 858 WP_187569455.1 glycosyltransferase family 2 protein -
  H9L17_RS10790 (H9L17_10785) - 2343875..2345011 (+) 1137 WP_246455076.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46254.92 Da        Isoelectric Point: 10.1455

>NTDB_id=477947 H9L17_RS10775 WP_187569453.1 2339883..2341151(-) (pilC) [Thermomonas brevis strain KACC 16975]
MSARRAAISKVREKAEARRLNPLEEFVWQGRDKRGKVMKGEQLARNANLLRADLRKQGINPTMVKPKPKPLFGSGAKKIS
ARDIAVFSRQIATMMKSGVPIVTALEIIGGGNKNPAMKKMVNGLRNDIEGGASIYEAMSQYPVQFDELYRNLVRAGESSG
VLETVLETIATYKENIESIKGKIKKALFYPATVIAVAIIVCAVLMIYVVPIFKETFSSFGADLPAFTALVFGISDIIVKW
FWLIGIIVGGAIGFFIYTYKRSIKLQHTIDRLMLKIPVIGKVLNESAIARFARTLALTFRAGVPLVEAMDNVAGATGSMV
YQQAVMKMKDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDTMLLKVAEFYEEEVSNTVDALSSLIEPMVMVIIG
GLVGSIVIAMYLPIFKIAMTVM

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=477947 H9L17_RS10775 WP_187569453.1 2339883..2341151(-) (pilC) [Thermomonas brevis strain KACC 16975]
ATGTCCGCACGCAGAGCCGCCATCAGCAAGGTTCGTGAAAAGGCCGAGGCCCGCCGGCTGAACCCGCTGGAGGAATTCGT
CTGGCAGGGCCGCGACAAGCGCGGCAAGGTGATGAAGGGCGAGCAGCTGGCGCGCAACGCCAACCTGCTGCGCGCCGACC
TGCGCAAGCAGGGCATCAACCCGACCATGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGTAGCGGGGCCAAGAAAATCTCT
GCACGCGACATTGCCGTGTTCAGCCGCCAGATCGCTACCATGATGAAATCCGGCGTGCCGATCGTGACGGCGCTGGAAAT
CATCGGCGGCGGCAACAAGAACCCGGCGATGAAGAAGATGGTCAACGGTCTGCGCAACGACATCGAAGGCGGTGCGTCCA
TCTACGAAGCGATGAGCCAGTACCCGGTGCAGTTTGATGAGCTGTATCGCAACCTGGTGCGCGCCGGCGAGTCCTCCGGC
GTGCTGGAAACCGTGCTGGAGACCATCGCCACCTACAAGGAAAACATCGAGAGCATCAAGGGCAAGATCAAGAAGGCGCT
GTTCTATCCCGCCACGGTGATCGCCGTGGCCATCATCGTCTGCGCGGTACTGATGATCTACGTGGTGCCGATCTTCAAGG
AGACCTTCTCCAGCTTCGGCGCCGACCTCCCCGCTTTTACCGCGCTGGTATTCGGTATTTCCGACATCATCGTGAAATGG
TTCTGGCTGATCGGCATCATAGTAGGCGGCGCGATAGGCTTTTTCATCTATACCTACAAGCGGTCCATCAAGCTGCAGCA
CACCATCGACCGGCTGATGCTCAAGATCCCGGTGATCGGCAAGGTGTTGAATGAATCGGCCATTGCCCGATTCGCCCGCA
CCTTGGCGCTGACCTTCCGCGCCGGTGTGCCGCTGGTGGAGGCGATGGACAACGTCGCCGGCGCCACCGGCAGCATGGTC
TACCAACAAGCCGTCATGAAAATGAAGGACGACGTGTCGGTGGGCTATCCGGTCAACGTGGCGATGAAGCAGGTCAACCT
GTTCCCGCACATGGTGGTGCAGATGACCGCGATCGGCGAGGAAGCCGGCGCGCTGGACACCATGCTGCTGAAGGTGGCCG
AGTTCTATGAGGAAGAAGTCAGCAACACGGTGGATGCGCTGTCCAGCCTGATCGAGCCGATGGTGATGGTGATCATCGGC
GGCCTGGTGGGTTCGATCGTGATCGCGATGTACCTGCCGATCTTCAAGATCGCCATGACGGTGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9QQR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.75

94.787

0.491
  pilC Pseudomonas stutzeri DSM 10701

51.768

93.839

0.486
  pilC Acinetobacter baylyi ADP1

49.507

96.209

0.476
  pilC Acinetobacter baumannii D1279779

48.363

94.076

0.455
  pilG Neisseria gonorrhoeae MS11

42.537

95.261

0.405
  pilG Neisseria meningitidis 44/76-A

42.289

95.261

0.403
  pilC Vibrio campbellii strain DS40M4

38.765

95.972

0.372
  pilC Vibrio cholerae strain A1552

38.06

95.261

0.363