Detailed information NTG0477517

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J3P56_RS05195
• Genome accession: NZ_CP071522
• Coordinates: 1094971..1095963 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UPEC129
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1089971..1100963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3P56_RS05165 (J3P56_05165)	ispD	1090032..1090742 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J3P56_RS05170 (J3P56_05170)	ispF	1090742..1091221 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J3P56_RS05175 (J3P56_05175)	truD	1091218..1092267 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
J3P56_RS05180 (J3P56_05180)	surE	1092248..1093009 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J3P56_RS05185 (J3P56_05185)	pcm	1093003..1093629 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
J3P56_RS05190 (J3P56_05190)	nlpD	1093814..1094908 (+)	1095	WP_306305012.1	murein hydrolase activator NlpD	-
J3P56_RS05195 (J3P56_05195)	rpoS	1094971..1095963 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J3P56_RS05200 (J3P56_05200)	-	1096141..1096692 (-)	552	WP_001179442.1	flavodoxin family protein	-
J3P56_RS05205 (J3P56_05205)	-	1096917..1097960 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
J3P56_RS05210 (J3P56_05210)	ygbN	1098103..1099467 (-)	1365	WP_000104443.1	GntP family transporter	-
J3P56_RS05215 (J3P56_05215)	ygbM	1099556..1100332 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=477517 J3P56_RS05195 WP_000081550.1 1094971..1095963(+) (rpoS) [Escherichia coli strain UPEC129]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=477517 J3P56_RS05195 WP_000081550.1 1094971..1095963(+) (rpoS) [Escherichia coli strain UPEC129]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715