Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JZY07_RS11400 Genome accession   NZ_CP071305
Coordinates   2314758..2315852 (+) Length   364 a.a.
NCBI ID   WP_024411901.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309758..2320852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS11375 (JZY07_11375) pgsA 2310280..2310819 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JZY07_RS11380 (JZY07_11380) rodZ 2310829..2311683 (-) 855 WP_024411897.1 cytoskeleton protein RodZ -
  JZY07_RS11385 (JZY07_11385) - 2311765..2313048 (-) 1284 WP_024411898.1 pitrilysin family protein -
  JZY07_RS11390 (JZY07_11390) - 2313045..2314298 (-) 1254 WP_024411899.1 pitrilysin family protein -
  JZY07_RS11395 (JZY07_11395) yaaA 2314372..2314755 (+) 384 WP_024411900.1 S4 domain-containing protein YaaA -
  JZY07_RS11400 (JZY07_11400) recF 2314758..2315852 (+) 1095 WP_024411901.1 DNA replication/repair protein RecF Machinery gene
  JZY07_RS11405 (JZY07_11405) guaB 2316122..2317603 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  JZY07_RS11410 (JZY07_11410) trpS 2317835..2318860 (-) 1026 WP_024400058.1 tryptophan--tRNA ligase -
  JZY07_RS11415 (JZY07_11415) - 2319215..2320087 (+) 873 WP_024400057.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42218.33 Da        Isoelectric Point: 7.0557

>NTDB_id=476730 JZY07_RS11400 WP_024411901.1 2314758..2315852(+) (recF) [Streptococcus suis strain SC183]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYKTSIELTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=476730 JZY07_RS11400 WP_024411901.1 2314758..2315852(+) (recF) [Streptococcus suis strain SC183]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTGCTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACAAAACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442