Detailed information NTG0476338

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: H8S96_RS09020
• Genome accession: NZ_CP060493
• Coordinates: 2155267..2157138 (-)
• Length: 623 a.a.
• NCBI ID: WP_011068647.1
• Uniprot ID: Q8G7T3
• Organism: Bifidobacterium longum strain BIM B-813D
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2157390..2169713	2155267..2157138	flank	252

Gene organization within MGE regions

Location: 2155267..2169713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8S96_RS09020 (H8S96_09020)	rcrP	2155267..2157138 (-)	1872	WP_011068647.1	ABC transporter ATP-binding protein	Regulator
H8S96_RS09025 (H8S96_09025)	-	2157390..2157920 (-)	531	WP_011068645.1	MarR family winged helix-turn-helix transcriptional regulator	-
H8S96_RS09030 (H8S96_09030)	-	2158282..2158875 (+)	594	WP_013582999.1	BRO family protein	-
H8S96_RS09035 (H8S96_09035)	-	2159341..2162445 (-)	3105	WP_392387771.1	bacterial Ig-like domain-containing protein	-
H8S96_RS09925	-	2162750..2162815 (-)	66	WP_349816200.1	hypothetical protein	-
H8S96_RS09040 (H8S96_09040)	-	2163389..2167930 (-)	4542	WP_059280438.1	exo-beta-1,6-galactobiohydrolase	-

Sequence

Protein

• Length: 623 a.a.
• Molecular weight: 68056.50 Da
• Isoelectric Point: 5.0180

>NTDB_id=476338 H8S96_RS09020 WP_011068647.1 2155267..2157138(-) (rcrP) [Bifidobacterium longum strain BIM B-813D]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFRGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide

• Length: 1872 bp

>NTDB_id=476338 H8S96_RS09020 WP_011068647.1 2155267..2157138(-) (rcrP) [Bifidobacterium longum strain BIM B-813D]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGTCATGCA
GACCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCTCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAGGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (359-543)

• ABC transporter transmembrane region (ABC_membrane) (54-292)

3D structure

• AlphaFold DB: Q8G7T3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	48.657	100	0.494