Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LCGL_RS10730 Genome accession   NC_017490
Coordinates   148010..148426 (+) Length   138 a.a.
NCBI ID   WP_014024177.1    Uniprot ID   -
Organism   Lactococcus garvieae Lg2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143010..153426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGL_RS10705 (LCGL_0134) guaB 143842..145323 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LCGL_RS10710 (LCGL_0135) rpsU 145446..145622 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LCGL_RS10715 (LCGL_0136) comGA 145809..146753 (+) 945 WP_014024175.1 competence type IV pilus ATPase ComGA Machinery gene
  LCGL_RS10720 (LCGL_0137) comGB 146692..147711 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  LCGL_RS10725 (LCGL_0138) comYC 147730..148035 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  LCGL_RS10730 (LCGL_0139) comGD 148010..148426 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  LCGL_RS10735 (LCGL_0140) comGE 148458..148691 (+) 234 WP_231844109.1 competence type IV pilus minor pilin ComGE -
  LCGL_RS10740 (LCGL_0141) comYF 148672..149112 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  LCGL_RS10745 (LCGL_0143) - 149345..150190 (+) 846 WP_014024181.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LCGL_RS10750 (LCGL_0144) - 150276..151145 (-) 870 WP_014570921.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15820.51 Da        Isoelectric Point: 10.0791

>NTDB_id=47602 LCGL_RS10730 WP_014024177.1 148010..148426(+) (comGD) [Lactococcus garvieae Lg2]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=47602 LCGL_RS10730 WP_014024177.1 148010..148426(+) (comGD) [Lactococcus garvieae Lg2]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGTAATGGTGCACTCTATAGCCAA
GAGGAAATGCTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362

Multiple sequence alignment