Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   JS608_RS09845 Genome accession   NZ_CP071042
Coordinates   1944931..1945953 (+) Length   340 a.a.
NCBI ID   WP_079004831.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939931..1950953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS09805 (JS608_01952) - 1940290..1940529 (+) 240 WP_003154475.1 YlbE-like family protein -
  JS608_RS09810 (JS608_01953) ylbF 1940600..1941049 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  JS608_RS09815 (JS608_01954) - 1941108..1941380 (+) 273 WP_003154470.1 YlbG family protein -
  JS608_RS09820 (JS608_01955) - 1941471..1941680 (+) 210 WP_015388275.1 hypothetical protein -
  JS608_RS09825 (JS608_01956) rsmD 1941680..1942234 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JS608_RS09830 (JS608_01957) coaD 1942239..1942721 (+) 483 WP_043867073.1 pantetheine-phosphate adenylyltransferase -
  JS608_RS09835 (JS608_01958) ylbJ 1942740..1943966 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  JS608_RS09840 (JS608_01959) - 1944146..1944925 (+) 780 WP_014304961.1 patatin family protein -
  JS608_RS09845 (JS608_01960) sepM 1944931..1945953 (+) 1023 WP_079004831.1 SepM family pheromone-processing serine protease Regulator
  JS608_RS09850 (JS608_01961) - 1945972..1947219 (-) 1248 WP_014304963.1 nucleotidyltransferase -
  JS608_RS09855 (JS608_01962) - 1947428..1947946 (+) 519 WP_003154459.1 DUF177 domain-containing protein -
  JS608_RS09860 (JS608_01963) rpmF 1947968..1948147 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  JS608_RS09865 (JS608_01964) gerR 1948306..1948881 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  JS608_RS09870 (JS608_01965) - 1948922..1949404 (-) 483 WP_015388272.1 N-acetyltransferase -
  JS608_RS09875 (JS608_01966) - 1949567..1950448 (+) 882 WP_032868805.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37399.93 Da        Isoelectric Point: 7.4475

>NTDB_id=475677 JS608_RS09845 WP_079004831.1 1944931..1945953(+) (sepM) [Bacillus amyloliquefaciens isolate ELA1901024]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIALKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDHLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=475677 JS608_RS09845 WP_079004831.1 1944931..1945953(+) (sepM) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAGAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGCGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGATC
GGAACGTGAAAGTAAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCATCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(100-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(128-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.663

100

0.391