Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   DMSX03_RS06120 Genome accession   NZ_CP060271
Coordinates   1305910..1308297 (+) Length   795 a.a.
NCBI ID   WP_029377129.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300910..1313297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS06100 sal 1301155..1302786 (+) 1632 WP_029377125.1 Sal family ABC-F type ribosomal protection protein -
  DMSX03_RS06105 - 1302847..1303992 (+) 1146 WP_029377126.1 cysteine desulfurase family protein -
  DMSX03_RS06110 mnmA 1303993..1305105 (+) 1113 WP_186335612.1 tRNA 2-thiouridine(34) synthase MnmA -
  DMSX03_RS06115 - 1305238..1305906 (+) 669 WP_029377128.1 tetratricopeptide repeat protein -
  DMSX03_RS06120 recD2 1305910..1308297 (+) 2388 WP_029377129.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DMSX03_RS06125 alaS 1308646..1311276 (+) 2631 WP_029377130.1 alanine--tRNA ligase -
  DMSX03_RS06130 - 1311345..1311605 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  DMSX03_RS06135 ruvX 1311609..1312037 (+) 429 WP_029377132.1 Holliday junction resolvase RuvX -
  DMSX03_RS06140 - 1312054..1312386 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89587.13 Da        Isoelectric Point: 4.5117

>NTDB_id=475103 DMSX03_RS06120 WP_029377129.1 1305910..1308297(+) (recD2) [Staphylococcus xylosus strain DMSX03]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNIVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=475103 DMSX03_RS06120 WP_029377129.1 1305910..1308297(+) (recD2) [Staphylococcus xylosus strain DMSX03]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGAAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTGCCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTTAACAT
AGTTGAAAAAAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAGTGTATAAAACAAGGT
CATACGTATTTACCTACTAATAATGTACTAGAGATGACCCAAGATATGCTATCACAACCACCAGGTGAATTAATAGAAAC
TCAGCAGCTTGAGCAAGTTTTACAAGATTTAGTCAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATCCCAA
GTTTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCGGTAGTTCTAGGT
GCGCCGACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACAGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACGCAACCAGAAGATATCTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCAATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
TTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATCTAATTGACTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGCTCAAGTATTATAGAATTAGCACATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GGTTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCAGTTGTTGAAAAAGTGGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAGCTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGTGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTTTTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATTCATAAGTCACAAGGATCAGAATTTCCAATTGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGATCCGCAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACGCAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501