Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   I653_RS07775 Genome accession   NC_020832
Coordinates   1527072..1527521 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1522072..1532521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS07735 (I653_07660) ctaE 1522088..1522711 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  I653_RS07740 (I653_07665) ctaF 1522714..1523046 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  I653_RS07745 (I653_07670) ctaG 1523074..1523967 (+) 894 WP_015483193.1 cytochrome c oxidase assembly factor CtaG -
  I653_RS07750 (I653_07675) ylbA 1523999..1524361 (-) 363 WP_015383585.1 YugN family protein -
  I653_RS07755 (I653_07680) ylbB 1524501..1524947 (+) 447 WP_003221362.1 CBS domain-containing protein -
  I653_RS07760 (I653_07685) ylbC 1525031..1526071 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  I653_RS07765 (I653_07690) ylbD 1526303..1526701 (+) 399 WP_003232233.1 YlbD family protein -
  I653_RS07770 (I653_07695) ylbE 1526717..1526956 (+) 240 WP_003232231.1 YlbE-like family protein -
  I653_RS07775 (I653_07700) ylbF 1527072..1527521 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  I653_RS07780 (I653_07705) ylbG 1527576..1527848 (+) 273 WP_009967171.1 YlbG family protein -
  I653_RS07785 (I653_07710) rsmD 1528171..1528725 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I653_RS07790 (I653_07715) coaD 1528730..1529215 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  I653_RS07795 (I653_07720) spoVV 1529226..1530452 (-) 1227 WP_015483197.1 dipicolinic acid transporter SpoVV -
  I653_RS07800 (I653_07725) ylbK 1530633..1531415 (+) 783 WP_015383589.1 patatin family protein -
  I653_RS07805 (I653_07730) sepM 1531417..1532439 (+) 1023 WP_015483198.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=47462 I653_RS07775 WP_003221370.1 1527072..1527521(+) (ylbF) [Bacillus subtilis subsp. subtilis str. BAB-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=47462 I653_RS07775 WP_003221370.1 1527072..1527521(+) (ylbF) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment