Detailed information NTG0474350

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: H7F25_RS05390
• Genome accession: NZ_CP060191
• Coordinates: 1099703..1101805 (-)
• Length: 700 a.a.
• NCBI ID: WP_024426836.1
• Uniprot ID: -
• Organism: Bacillus sp. PAMC28571
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1094703..1106805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F25_RS05365 (H7F25_05365)	-	1095120..1095362 (+)	243	WP_039178071.1	aspartyl-phosphate phosphatase Spo0E family protein	-
H7F25_RS05370 (H7F25_05370)	-	1095409..1096914 (-)	1506	WP_185854364.1	ATP-binding protein	-
H7F25_RS05375 (H7F25_05375)	-	1097119..1097574 (+)	456	WP_024424678.1	MarR family winged helix-turn-helix transcriptional regulator	-
H7F25_RS05380 (H7F25_05380)	motB	1097767..1098537 (-)	771	WP_024424679.1	flagellar motor protein MotB	-
H7F25_RS05385 (H7F25_05385)	motA	1098530..1099324 (-)	795	WP_024424680.1	flagellar motor stator protein MotA	-
H7F25_RS05390 (H7F25_05390)	clpC	1099703..1101805 (-)	2103	WP_024426836.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
H7F25_RS05395 (H7F25_05395)	-	1102050..1103093 (+)	1044	WP_034623360.1	membrane protein	-
H7F25_RS05400 (H7F25_05400)	queC	1103368..1104024 (+)	657	WP_024424683.1	7-cyano-7-deazaguanine synthase QueC	-
H7F25_RS05405 (H7F25_05405)	queD	1104025..1104465 (+)	441	WP_024424684.1	6-carboxytetrahydropterin synthase QueD	-
H7F25_RS05410 (H7F25_05410)	queE	1104458..1105189 (+)	732	WP_034623358.1	7-carboxy-7-deazaguanine synthase QueE	-
H7F25_RS05415 (H7F25_05415)	queF	1105205..1105702 (+)	498	WP_024426839.1	preQ(1) synthase	-
H7F25_RS05420 (H7F25_05420)	-	1106135..1106497 (-)	363	WP_034667321.1	winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 77966.55 Da
• Isoelectric Point: 4.9961

>NTDB_id=474350 H7F25_RS05390 WP_024426836.1 1099703..1101805(-) (clpC) [Bacillus sp. PAMC28571]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAFEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDREDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=474350 H7F25_RS05390 WP_024426836.1 1099703..1101805(-) (clpC) [Bacillus sp. PAMC28571]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCGCAACTCTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATTTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCATCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGTGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCTTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAATCGATTAGCGGAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACTAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCGGTTGATAAAGTGGCCAAAGCCGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACATTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAAGCGTTTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAGAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTTCATGTCACA
AATGAAGCAAAAGAAAAGATCGCAGAGCTTGGATATCATCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-687)

• AAA lid domain (AAA_lid_9) (253-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	57.182	100	0.603
clpE	Streptococcus mutans UA159	56.469	100	0.599
clpE	Streptococcus pneumoniae Rx1	55.663	100	0.576
clpE	Streptococcus pneumoniae D39	55.663	100	0.576
clpE	Streptococcus pneumoniae R6	55.663	100	0.576
clpE	Streptococcus pneumoniae TIGR4	55.663	100	0.576
clpC	Bacillus subtilis subsp. subtilis str. 168	53.881	95.714	0.516
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.086	93.143	0.439
clpC	Streptococcus thermophilus LMD-9	46.285	92.286	0.427
clpC	Streptococcus thermophilus LMG 18311	46.13	92.286	0.426
clpC	Streptococcus mutans UA159	44.172	93.143	0.411
clpC	Streptococcus pneumoniae TIGR4	45.064	89.714	0.404
clpC	Streptococcus pneumoniae Rx1	45.265	89	0.403
clpC	Streptococcus pneumoniae D39	45.265	89	0.403