Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   JRY11_RS07500 Genome accession   NZ_CP070382
Coordinates   1397745..1399115 (+) Length   456 a.a.
NCBI ID   WP_023189696.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392745..1404115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS07485 (JRY11_001504) - 1393424..1395679 (+) 2256 WP_025016945.1 glycoside hydrolase family 65 protein -
  JRY11_RS07490 (JRY11_001505) - 1395832..1396806 (+) 975 WP_003130365.1 LacI family DNA-binding transcriptional regulator -
  JRY11_RS07495 (JRY11_001506) ciaR 1396984..1397652 (+) 669 WP_021722129.1 response regulator transcription factor Regulator
  JRY11_RS07500 (JRY11_001507) ciaH 1397745..1399115 (+) 1371 WP_023189696.1 HAMP domain-containing sensor histidine kinase Regulator
  JRY11_RS07505 (JRY11_001508) - 1399263..1401005 (+) 1743 WP_025016942.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JRY11_RS07510 (JRY11_001509) yidD 1401122..1401388 (+) 267 WP_010906087.1 membrane protein insertion efficiency factor YidD -
  JRY11_RS07515 (JRY11_001510) - 1401510..1402943 (+) 1434 WP_023189694.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 51301.84 Da        Isoelectric Point: 9.3138

>NTDB_id=474165 JRY11_RS07500 WP_023189696.1 1397745..1399115(+) (ciaH) [Lactococcus lactis strain KF140]
MKKIIKKVKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLIEAANNQLGMNNSQD
SGYYGPNNSVIFYDSEGKSFIPSAGSNANISTDFGMSLLQKTMKFNENQINTIQTVSVKNPYGDNWHYRYLTTSQFIITN
TDGTVTPVYAQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSVIISLYLANWTLKPILAAYEKQKEFVENASHELRTPLAI
LQNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTATYFENIFNSYEMLAENAGKKF
SGHLKLDGTINLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKART
RQKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIVRIRVDSTISNPAKIFQKL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=474165 JRY11_RS07500 WP_023189696.1 1397745..1399115(+) (ciaH) [Lactococcus lactis strain KF140]
TTGAAGAAAATAATTAAAAAAGTTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTCTTTTTGATAGAAGCAGCGAATAATCAATTAGGAATGAATAATTCGCAAGAT
AGTGGCTATTACGGTCCCAATAATAGTGTAATTTTTTATGATTCAGAGGGTAAAAGTTTCATACCTTCAGCGGGTTCAAA
TGCAAATATAAGTACAGACTTTGGCATGAGCCTTCTGCAAAAAACAATGAAATTTAACGAAAATCAAATTAACACTATTC
AAACTGTTTCTGTAAAAAATCCTTATGGAGATAATTGGCACTATCGTTATCTGACAACATCACAATTTATTATTACAAAT
ACTGATGGAACAGTAACTCCGGTTTATGCACAAATTTTTTCAAATGTTGACCAAATTCAAGATGCCATGAGCCGAGCCAT
GTGGGTCATTGTGACAACAATGATTACTTTCTGGCTTCTGTCAGTAATTATTAGTCTATATCTTGCAAACTGGACATTAA
AACCAATTTTGGCCGCTTATGAAAAACAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATC
TTGCAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACAGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTT
ATCAGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAGC
CAGAGGCGACTACGGCAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTT
TCAGGCCATTTGAAATTAGATGGAACGATTAATTTGGACCAAGCCCTGATCAAACAATTGCTAACCATATTATTTGATAA
TGCTCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTCTTAGTTTTTGCTGTCG
CCGATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACG
CGTCAAAAAGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTACAATGGGAAGATTACAGTTGA
AGATAATAAACCTAAAGGTACAAAATTCATTGTTAGAATTCGTGTGGATAGCACAATTTCAAATCCTGCAAAAATTTTCC
AAAAGTTGTAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(333-442)

His Kinase A (phospho-acceptor) domain (HisKA)

(223-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.14

94.298

0.454
  ciaH Streptococcus pneumoniae Rx1

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae D39

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae R6

44.543

98.465

0.439
  ciaH Streptococcus pneumoniae TIGR4

44.543

98.465

0.439