Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HNQ25_RS14900 Genome accession   NZ_CP060009
Coordinates   3181686..3182009 (-) Length   107 a.a.
NCBI ID   WP_179545111.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain B10D7D     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3176686..3187009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNQ25_RS14885 (HNQ25_14885) uvrB 3177436..3179451 (-) 2016 WP_061239607.1 excinuclease ABC subunit UvrB -
  HNQ25_RS14890 (HNQ25_14890) - 3179696..3180892 (+) 1197 WP_179545110.1 amino acid aminotransferase -
  HNQ25_RS14900 (HNQ25_14900) comEA/comE1 3181686..3182009 (-) 324 WP_179545111.1 helix-hairpin-helix domain-containing protein Machinery gene
  HNQ25_RS14905 (HNQ25_14905) - 3182099..3184099 (-) 2001 WP_179545112.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HNQ25_RS14910 (HNQ25_14910) - 3184109..3184696 (-) 588 WP_179545113.1 acetyltransferase -
  HNQ25_RS14915 (HNQ25_14915) - 3184693..3185709 (-) 1017 WP_179545114.1 glycosyltransferase family 4 protein -
  HNQ25_RS14920 (HNQ25_14920) - 3185706..3186668 (-) 963 WP_179545115.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11166.74 Da        Isoelectric Point: 5.0931

>NTDB_id=473273 HNQ25_RS14900 WP_179545111.1 3181686..3182009(-) (comEA/comE1) [Pseudomonas sediminis strain B10D7D]
MLRVRLSSLLFAVLASFSLAAAAAEPPKTESAKSGTVQLAQVAVVNLNTADAATLQSELVGIGATKAQAIVAYREEHGNF
ASVDELLEVKGIGEATLEKNRDKLSVN

Nucleotide


Download         Length: 324 bp        

>NTDB_id=473273 HNQ25_RS14900 WP_179545111.1 3181686..3182009(-) (comEA/comE1) [Pseudomonas sediminis strain B10D7D]
ATGCTGAGAGTCCGTCTATCTTCCCTTCTGTTCGCTGTTCTCGCTTCTTTCTCTCTGGCTGCTGCCGCAGCTGAACCCCC
GAAAACCGAAAGCGCCAAGTCTGGCACCGTTCAGTTGGCACAGGTTGCTGTGGTCAATCTCAACACCGCCGACGCTGCAA
CGCTGCAGAGTGAGTTGGTGGGGATTGGTGCGACCAAGGCTCAAGCGATTGTGGCTTACCGTGAGGAACACGGTAATTTT
GCTTCGGTCGATGAGTTGCTTGAAGTGAAGGGGATTGGTGAAGCGACGTTGGAGAAGAATCGCGACAAGCTGAGTGTTAA
CTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.182

100

0.495
  comEA Legionella pneumophila str. Paris

41.748

96.262

0.402
  comEA Legionella pneumophila strain ERS1305867

41.748

96.262

0.402
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

90.654

0.393
  comEA Vibrio campbellii strain DS40M4

41.237

90.654

0.374