Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ABD1_RS14330 | Genome accession | NC_020547 |
| Coordinates | 3044333..3044848 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii D1279779 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3039333..3049848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABD1_RS14310 (ABD1_27830) | - | 3039652..3041112 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| ABD1_RS14315 (ABD1_27840) | - | 3041389..3042594 (+) | 1206 | WP_000512694.1 | RtcB family protein | - |
| ABD1_RS18195 (ABD1_27850) | - | 3042613..3042756 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| ABD1_RS14325 (ABD1_27860) | omp38 | 3042881..3043951 (-) | 1071 | WP_000777875.1 | outer membrane protein Omp38 | - |
| ABD1_RS14330 (ABD1_27870) | fimT | 3044333..3044848 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| ABD1_RS14335 (ABD1_27880) | - | 3044957..3046132 (+) | 1176 | WP_000129972.1 | thiolase family protein | - |
| ABD1_RS14340 (ABD1_27890) | - | 3046259..3046702 (+) | 444 | WP_001176579.1 | VOC family protein | - |
| ABD1_RS14345 (ABD1_27900) | - | 3046745..3047098 (-) | 354 | WP_000457779.1 | DMT family transporter | - |
| ABD1_RS14350 (ABD1_27910) | - | 3047180..3047665 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| ABD1_RS14355 (ABD1_27920) | - | 3047658..3049301 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=47130 ABD1_RS14330 WP_000477151.1 3044333..3044848(+) (fimT) [Acinetobacter baumannii D1279779]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=47130 ABD1_RS14330 WP_000477151.1 3044333..3044848(+) (fimT) [Acinetobacter baumannii D1279779]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |