Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L96_RS07840 Genome accession   NZ_CP059565
Coordinates   1649300..1649596 (+) Length   98 a.a.
NCBI ID   WP_009117675.1    Uniprot ID   G4CTX5
Organism   Neisseria wadsworthii strain DSM 22245     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1644300..1654596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS07840 (H3L96_07830) comE 1649300..1649596 (+) 297 WP_009117675.1 helix-hairpin-helix domain-containing protein Machinery gene
  H3L96_RS07845 (H3L96_07835) - 1649978..1650571 (+) 594 WP_009116348.1 hypothetical protein -
  H3L96_RS07850 (H3L96_07840) - 1650659..1651339 (-) 681 Protein_1534 IS1595 family transposase -
  H3L96_RS07855 (H3L96_07845) - 1651377..1651574 (-) 198 WP_009116351.1 hypothetical protein -
  H3L96_RS07860 (H3L96_07850) narH 1651706..1653265 (+) 1560 WP_009116352.1 nitrate reductase subunit beta -
  H3L96_RS07865 (H3L96_07855) narJ 1653265..1653933 (+) 669 WP_009116353.1 nitrate reductase molybdenum cofactor assembly chaperone -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10090.95 Da        Isoelectric Point: 10.5335

>NTDB_id=470704 H3L96_RS07840 WP_009117675.1 1649300..1649596(+) (comE) [Neisseria wadsworthii strain DSM 22245]
MKKLMLGALAALSCAWSLAAVNINTATAEELKALPGIGPAKAAAIVEYRQANGAFKSVEELKKVKGIGDGIFNKLKEEAT
VSGAAKAKAAKPLQPKAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=470704 H3L96_RS07840 WP_009117675.1 1649300..1649596(+) (comE) [Neisseria wadsworthii strain DSM 22245]
ATGAAAAAACTGATGTTAGGTGCGTTGGCGGCGTTGTCGTGTGCGTGGTCGTTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGCCCGGCGAAGGCGGCGGCGATAGTGGAGTACCGTCAGGCCAACGGTG
CCTTTAAAAGTGTGGAGGAGTTGAAGAAGGTGAAGGGTATCGGCGACGGTATCTTCAACAAACTGAAGGAAGAGGCGACG
GTATCGGGTGCGGCGAAGGCCAAAGCGGCCAAACCGCTGCAGCCTAAGGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CTX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.098

83.673

0.469