Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H3L98_RS04570 Genome accession   NZ_CP059563
Coordinates   825186..826247 (+) Length   353 a.a.
NCBI ID   WP_027022459.1    Uniprot ID   -
Organism   Conchiformibius steedae strain DSM 2580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820186..831247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L98_RS04545 (H3L98_04550) - 820528..821043 (+) 516 WP_027022464.1 hemerythrin domain-containing protein -
  H3L98_RS04550 (H3L98_04555) - 821094..822884 (-) 1791 WP_027022463.1 aminopeptidase P family protein -
  H3L98_RS04555 (H3L98_04560) - 822968..823276 (-) 309 WP_027022462.1 hypothetical protein -
  H3L98_RS04560 (H3L98_04565) - 823678..824160 (+) 483 WP_027022461.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  H3L98_RS04565 (H3L98_04570) pgsA 824503..825087 (+) 585 WP_027022460.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H3L98_RS04570 (H3L98_04575) recA 825186..826247 (+) 1062 WP_027022459.1 recombinase RecA Machinery gene
  H3L98_RS04575 (H3L98_04580) - 826404..826871 (-) 468 WP_084481911.1 DUF2846 domain-containing protein -
  H3L98_RS04580 (H3L98_04585) rpsU 827029..827241 (-) 213 WP_027022457.1 30S ribosomal protein S21 -
  H3L98_RS04585 (H3L98_04590) - 827474..828106 (-) 633 WP_156932331.1 hypothetical protein -
  H3L98_RS04590 (H3L98_04595) folK 828090..828584 (-) 495 WP_027022456.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H3L98_RS04595 (H3L98_04600) smpB 828598..829044 (-) 447 WP_027022455.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37895.36 Da        Isoelectric Point: 4.9565

>NTDB_id=470646 H3L98_RS04570 WP_027022459.1 825186..826247(+) (recA) [Conchiformibius steedae strain DSM 2580]
MATKPDNEKSLALQAALAQIEKSFGKGAVMKMDGSHQEDDLQVISTGSLTIDLALGVGGLPRGRIVEIFGPESSGKTTLC
LETIAQCQKNGGVCAFIDAENAFDPVYARKLGVNVEELLVSQPDTGEQALEICDMLVRSGGVDMVVVDSVAALVPKAEIE
GEMGDSHVGLHARLMSQALRKLTGNIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRGVQIKKGDD
VLGNETKVKVIKNKVAPPFRIADFDILYGEGISYEGELIDLGVKAGVVQKSGAWFSYNGAKIGQGKDNSRQWLKENPEIA
AEIDRKIREQSGLVQLVHEGTPEDDGVEVAPAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=470646 H3L98_RS04570 WP_027022459.1 825186..826247(+) (recA) [Conchiformibius steedae strain DSM 2580]
ATGGCAACAAAACCCGACAACGAAAAAAGCCTTGCCCTGCAAGCCGCGCTCGCCCAAATTGAAAAAAGTTTCGGCAAAGG
CGCGGTCATGAAAATGGACGGCAGCCATCAGGAAGACGATTTGCAAGTGATTTCCACTGGCTCGCTGACGATTGACCTTG
CCTTGGGCGTAGGCGGTTTGCCACGCGGACGGATTGTGGAAATTTTCGGACCCGAATCGTCAGGCAAAACCACTTTGTGT
TTGGAAACCATCGCCCAATGCCAAAAAAATGGCGGCGTATGTGCCTTTATTGATGCCGAAAACGCTTTTGACCCCGTGTA
TGCGCGTAAATTGGGCGTGAATGTGGAAGAGCTGCTGGTGTCGCAACCCGATACGGGCGAACAGGCTTTGGAAATCTGCG
ACATGCTGGTACGCAGCGGCGGTGTGGACATGGTGGTGGTGGATTCGGTTGCCGCGCTGGTGCCCAAAGCCGAAATTGAA
GGCGAAATGGGCGACAGCCATGTGGGTTTACACGCCCGCTTGATGAGCCAAGCCCTGCGTAAATTAACAGGCAACATCAA
AAAAACCAATACTTTGGTGGTGTTTATTAACCAAATCCGCATGAAAATTGGCGTGATGTTCGGCAGCCCCGAAACCACCA
CGGGCGGTAATGCGCTGAAATTCTACGCATCGGTGCGTTTGGACATCCGCCGTGGTGTACAAATCAAAAAAGGCGACGAT
GTTTTGGGCAATGAAACCAAAGTAAAAGTGATTAAAAACAAGGTTGCGCCGCCGTTCCGCATTGCCGATTTTGATATTTT
GTATGGCGAAGGCATCAGCTATGAAGGCGAACTGATTGATTTGGGCGTAAAAGCGGGCGTGGTGCAAAAATCGGGCGCGT
GGTTTAGCTACAACGGTGCAAAAATCGGTCAGGGCAAAGACAATTCGCGCCAATGGTTAAAAGAAAATCCTGAAATTGCA
GCGGAAATTGACCGTAAAATCCGCGAACAATCGGGCTTGGTGCAGTTGGTACACGAAGGCACGCCTGAAGATGACGGCGT
GGAAGTTGCGCCCGCAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

83.284

96.601

0.805
  recA Neisseria gonorrhoeae MS11

83.284

96.601

0.805
  recA Neisseria gonorrhoeae strain FA1090

83.284

96.601

0.805
  recA Pseudomonas stutzeri DSM 10701

70.03

95.467

0.669
  recA Acinetobacter baylyi ADP1

68.208

98.017

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.919

98.017

0.666
  recA Vibrio cholerae strain A1552

67.919

98.017

0.666
  recA Ralstonia pseudosolanacearum GMI1000

73.817

89.802

0.663
  recA Acinetobacter baumannii D1279779

68.023

97.45

0.663
  recA Glaesserella parasuis strain SC1401

72.274

90.935

0.657
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.565

94.334

0.609
  recA Helicobacter pylori strain NCTC11637

64.565

94.334

0.609
  recA Helicobacter pylori 26695

64.565

94.334

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

97.45

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

92.635

0.606
  recA Streptococcus mutans UA159

61.261

94.334

0.578
  recA Streptococcus mitis NCTC 12261

58.333

98.584

0.575
  recA Streptococcus mitis SK321

58.333

98.584

0.575
  recA Streptococcus pneumoniae D39

58.046

98.584

0.572
  recA Streptococcus pneumoniae TIGR4

58.046

98.584

0.572
  recA Streptococcus pneumoniae Rx1

58.046

98.584

0.572
  recA Streptococcus pneumoniae R6

58.046

98.584

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

57.925

98.3

0.569
  recA Streptococcus pyogenes NZ131

60.909

93.484

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.819

93.768

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.627

91.218

0.544