Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   JR441_RS02395 Genome accession   NZ_CP069789
Coordinates   470905..471339 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BIM B-569G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465905..476339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS02365 (JR441_02365) ydaD 466552..467412 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  JR441_RS02370 (JR441_02370) lyxE 467428..467931 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  JR441_RS02375 (JR441_02375) ydaF 468019..468570 (+) 552 WP_015252797.1 GNAT family protein -
  JR441_RS02380 (JR441_02380) ydaG 468648..469070 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  JR441_RS02385 (JR441_02385) amj 469576..470385 (+) 810 WP_015715258.1 lipid II flippase Amj -
  JR441_RS02390 (JR441_02390) ydzA 470430..470720 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  JR441_RS02395 (JR441_02395) lrpC 470905..471339 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  JR441_RS02400 (JR441_02400) topB 471404..473587 (+) 2184 WP_144527494.1 DNA topoisomerase III -
  JR441_RS02405 (JR441_02405) ephJ 473790..474878 (+) 1089 WP_046664274.1 lipoprotein YdaJ -
  JR441_RS02410 (JR441_02410) epsK 474859..475710 (+) 852 WP_046664273.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=470167 JR441_RS02395 WP_003246585.1 470905..471339(+) (lrpC) [Bacillus subtilis strain BIM B-569G]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=470167 JR441_RS02395 WP_003246585.1 470905..471339(+) (lrpC) [Bacillus subtilis strain BIM B-569G]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTATCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCATACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1