Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H2R00_RS18610 Genome accession   NZ_CP059494
Coordinates   3770652..3770936 (+) Length   94 a.a.
NCBI ID   WP_154996226.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765652..3775936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS18575 - 3765787..3766926 (+) 1140 WP_154996213.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  H2R00_RS18580 - 3766948..3767601 (+) 654 WP_154996216.1 ABC transporter permease -
  H2R00_RS18585 opuCC 3767615..3768532 (+) 918 WP_176276515.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  H2R00_RS18590 - 3768548..3769225 (+) 678 WP_182070036.1 ABC transporter permease -
  H2R00_RS18595 - 3769274..3769672 (-) 399 WP_176277045.1 helix-turn-helix transcriptional regulator -
  H2R00_RS18600 - 3769836..3770237 (-) 402 WP_182070037.1 transcriptional regulator -
  H2R00_RS18605 - 3770390..3770623 (+) 234 WP_085959538.1 helix-turn-helix transcriptional regulator -
  H2R00_RS18610 abrB 3770652..3770936 (+) 285 WP_154996226.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H2R00_RS18615 secG 3771107..3771337 (+) 231 WP_154996228.1 preprotein translocase subunit SecG -
  H2R00_RS18620 - 3771478..3772224 (+) 747 WP_182070038.1 carboxylesterase -
  H2R00_RS18625 rnr 3772238..3774541 (+) 2304 WP_182070039.1 ribonuclease R -
  H2R00_RS18630 smpB 3774657..3775130 (+) 474 WP_009329604.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10502.36 Da        Isoelectric Point: 7.9620

>NTDB_id=470091 H2R00_RS18610 WP_154996226.1 3770652..3770936(+) (abrB) [Bacillus haynesii strain P19]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIVLTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMTALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=470091 H2R00_RS18610 WP_154996226.1 3770652..3770936(+) (abrB) [Bacillus haynesii strain P19]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCCGGGTTGTTCTCCCGGTCGAAATGCGCAGAGTGCTGAA
TATCAATGAAAAGGATCCACTCGAAATATACACCGACGGAGAAAACATCGTTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCAGGCGGCAAAATCGTACTCAGCCCGCGGGGAGCGGAA
ATGCTCCTGGAAGATATGATGACAGCCTTGTCAGAAAAGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-84)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

96.809

0.532