Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H2R00_RS08775 Genome accession   NZ_CP059494
Coordinates   1759373..1761202 (-) Length   609 a.a.
NCBI ID   WP_315941034.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754373..1766202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS08745 - 1754754..1755389 (-) 636 WP_043925636.1 GTP pyrophosphokinase family protein -
  H2R00_RS08750 - 1755421..1755786 (-) 366 WP_154994836.1 hypothetical protein -
  H2R00_RS08755 - 1755917..1756489 (+) 573 WP_182070861.1 CYTH domain-containing protein -
  H2R00_RS08760 - 1756502..1757155 (+) 654 WP_154994832.1 lytic transglycosylase domain-containing protein -
  H2R00_RS08765 - 1757438..1757836 (+) 399 WP_154994830.1 thiol management oxidoreductase -
  H2R00_RS08770 spxH 1757833..1758735 (+) 903 WP_043925631.1 protease adaptor protein SpxH -
  H2R00_RS21230 - 1759147..1759314 (+) 168 WP_234112886.1 hypothetical protein -
  H2R00_RS08775 pepF 1759373..1761202 (-) 1830 WP_315941034.1 oligoendopeptidase F Regulator
  H2R00_RS08780 - 1761415..1762563 (-) 1149 WP_182070863.1 competence protein CoiA family protein -
  H2R00_RS08785 - 1762683..1764278 (+) 1596 WP_154994824.1 sensor histidine kinase -
  H2R00_RS08790 - 1764301..1765020 (+) 720 WP_154994822.1 response regulator -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70485.09 Da        Isoelectric Point: 4.8214

>NTDB_id=470055 H2R00_RS08775 WP_315941034.1 1759373..1761202(-) (pepF) [Bacillus haynesii strain P19]
MAEEKKSKKLPSREEVRQEDTWRLEDIFPSDDAWNEEFQAVKELLPKLSEFKGRLGHSADELYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSPSNTFGMLNNADMEFPEITDENGEKVQLTHGNYITFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLQRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLKPLGEEYSSILQEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=470055 H2R00_RS08775 WP_315941034.1 1759373..1761202(-) (pepF) [Bacillus haynesii strain P19]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAGGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAACGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGAATTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACGGGAAATTCTTTTTACCAAGGCCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCTGCGAGCGCCACGGCCTACATGGTGCCGGAAATATTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGT
TGGAAAAAGAGGAGTTAAAGCTTTACTCACACGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTGCTGAGCGAGGAA
GAGGAAGGGATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTCCTTCCAATACGTTCGGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGGGAAAAGGTGCAGCTCACGCACGGCAACTATATCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGTTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCGGCATTGTCGCG
CAACAGCATTCCTGAAGAAGTCTACGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCAACGCTATGTTG
AGCTTAGAAAAAAAGTGCTTGAGCTTGATGAAGTGCACATGTATGACCTGTATACCCCGCTGGTAAAGGATTCCGGAATG
AAAGTCACATACGAGCAGGCAAAGGACTATATGCTGAAGGGTCTTAAGCCTTTGGGGGAAGAATATTCATCCATCCTGCA
AGAAGGATTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGAAGCGGCGCCTATTCTTCAGGAACCTACG
GAACCAATCCGTATATTTTGATGAACTGGCAGGACAATGTCAACAACTTGTTTACGCTTGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTTGCTTCTAC
AACGAATGAAGCGCTTTTGGGAGAATACCTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTATATTTTGAACCATA
TGCTTGAAGGCTTTAAGGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATGTCAAAGCCCAG
GAAGGGGAACCGTTGACACCTGAGCTGTTAACGAGCATATACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTATATCAGTATGCAACAG
GCTTCAGTGCAGCTCAGGCGCTCAGCCAGCAGATTTTAAAAGAAGGAAAATCGGCTGTTGACCGCTATATTGAATTCCTG
AAAGCGGGAAGCTCTGATTATCCGATTGAAGTACTGAAAAAAGCCGGCGTCGATATGACATCTTCAGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTCTCCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.586

98.03

0.496