Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HU024_RS08620 Genome accession   NZ_CP059344
Coordinates   1794139..1794918 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain K01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789139..1799918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU024_RS08590 (HU024_08590) fliH 1789183..1789938 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  HU024_RS08595 (HU024_08595) fliG 1789931..1790947 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HU024_RS08600 (HU024_08600) fliF 1790960..1792570 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  HU024_RS08605 (HU024_08605) fliE 1792613..1792933 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HU024_RS08610 (HU024_08610) flgC 1792944..1793396 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  HU024_RS08615 (HU024_08615) flgB 1793396..1793785 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HU024_RS08620 (HU024_08620) codY 1794139..1794918 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HU024_RS08625 (HU024_08625) hslU 1794956..1796359 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  HU024_RS08630 (HU024_08630) hslV 1796376..1796921 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HU024_RS08635 (HU024_08635) xerC 1796937..1797854 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  HU024_RS08640 (HU024_08640) trmFO 1797924..1799230 (-) 1307 Protein_1709 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=468869 HU024_RS08620 WP_003154263.1 1794139..1794918(-) (codY) [Bacillus velezensis strain K01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=468869 HU024_RS08620 WP_003154263.1 1794139..1794918(-) (codY) [Bacillus velezensis strain K01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471