Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H0I83_RS12170 Genome accession   NZ_CP059141
Coordinates   2381503..2381781 (+) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376503..2386781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS12150 (H0I83_12030) - 2378273..2379082 (+) 810 WP_000678377.1 papain-like cysteine protease family protein -
  H0I83_RS12155 (H0I83_12035) - 2379108..2379713 (+) 606 WP_000517275.1 hypothetical protein -
  H0I83_RS12160 (H0I83_12040) - 2379854..2380105 (-) 252 WP_000827562.1 response regulator transcription factor -
  H0I83_RS12165 (H0I83_12045) - 2380484..2381362 (+) 879 WP_061667592.1 helix-turn-helix domain-containing protein -
  H0I83_RS12170 (H0I83_12050) abrB 2381503..2381781 (+) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H0I83_RS12175 (H0I83_12055) - 2382397..2383647 (+) 1251 WP_001032356.1 hypothetical protein -
  H0I83_RS12180 (H0I83_12060) - 2383715..2384473 (+) 759 WP_000347982.1 TSUP family transporter -
  H0I83_RS12185 (H0I83_12065) - 2384716..2385375 (+) 660 WP_061667591.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=467319 H0I83_RS12170 WP_000842214.1 2381503..2381781(+) (abrB) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=467319 H0I83_RS12170 WP_000842214.1 2381503..2381781(+) (abrB) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5