Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H0I83_RS00220 Genome accession   NZ_CP059141
Coordinates   40433..40717 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35433..45717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS00185 (H0I83_00185) tmk 35625..36251 (+) 627 WP_000677227.1 dTMP kinase -
  H0I83_RS00190 (H0I83_00190) holB 36287..37270 (+) 984 WP_000978586.1 DNA polymerase III subunit delta' -
  H0I83_RS00195 (H0I83_00195) - 37276..38103 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  H0I83_RS00200 (H0I83_00200) yabA 38118..38468 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  H0I83_RS00205 (H0I83_00205) - 38551..39291 (+) 741 WP_001055354.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H0I83_RS00210 (H0I83_00210) - 39278..39568 (+) 291 WP_086406416.1 GIY-YIG nuclease family protein -
  H0I83_RS00215 (H0I83_00215) rsmI 39537..40412 (+) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H0I83_RS00220 (H0I83_00220) abrB 40433..40717 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H0I83_RS00225 (H0I83_00225) metG 41204..43186 (+) 1983 WP_240528956.1 methionine--tRNA ligase -
  H0I83_RS00230 (H0I83_00230) - 43353..44120 (+) 768 WP_061666990.1 TatD family hydrolase -
  H0I83_RS00235 (H0I83_00235) rnmV 44335..44892 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=467298 H0I83_RS00220 WP_000843036.1 40433..40717(-) (abrB) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=467298 H0I83_RS00220 WP_000843036.1 40433..40717(-) (abrB) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851