Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HYH04_RS08550 Genome accession   NZ_CP059047
Coordinates   1844217..1844840 (-) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella ornithinolytica strain DSM 16926     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839217..1849840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH04_RS08535 (HYH04_08535) helD 1839453..1841507 (-) 2055 WP_032717632.1 DNA helicase IV -
  HYH04_RS08540 (HYH04_08540) - 1841630..1842076 (+) 447 WP_004860167.1 YccF domain-containing protein -
  HYH04_RS08545 (HYH04_08545) yccS 1842094..1844229 (+) 2136 WP_004860163.1 YccS family putative transporter -
  HYH04_RS08550 (HYH04_08550) sxy/tfoX 1844217..1844840 (-) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  HYH04_RS08555 (HYH04_08555) - 1844955..1845275 (-) 321 WP_128620917.1 hypothetical protein -
  HYH04_RS08560 (HYH04_08560) sulA 1845302..1845811 (+) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  HYH04_RS08565 (HYH04_08565) ompA 1846164..1847234 (+) 1071 WP_004860157.1 porin OmpA -
  HYH04_RS08570 (HYH04_08570) matP 1847343..1847795 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  HYH04_RS08575 (HYH04_08575) - 1847981..1849738 (+) 1758 WP_004860153.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=466723 HYH04_RS08550 WP_004860161.1 1844217..1844840(-) (sxy/tfoX) [Raoultella ornithinolytica strain DSM 16926]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=466723 HYH04_RS08550 WP_004860161.1 1844217..1844840(-) (sxy/tfoX) [Raoultella ornithinolytica strain DSM 16926]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGGGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502