Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6J32_RS05410 Genome accession   NZ_CP069437
Coordinates   1086404..1087165 (-) Length   253 a.a.
NCBI ID   WP_204156437.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081404..1092165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS05390 (I6J32_05395) aroB 1081716..1082813 (-) 1098 WP_204156434.1 3-dehydroquinate synthase -
  I6J32_RS05395 (I6J32_05400) - 1082882..1083418 (-) 537 WP_062334134.1 shikimate kinase -
  I6J32_RS05400 (I6J32_05405) comQ/pilQ 1083527..1085866 (-) 2340 WP_204156435.1 type IV pilus secretin family protein Machinery gene
  I6J32_RS05405 (I6J32_05410) comL/pilP 1085884..1086417 (-) 534 WP_204156436.1 pilus assembly protein PilP Machinery gene
  I6J32_RS05410 (I6J32_05415) pilO 1086404..1087165 (-) 762 WP_204156437.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J32_RS05415 (I6J32_05420) pilN 1087168..1087839 (-) 672 WP_204156438.1 PilN domain-containing protein Machinery gene
  I6J32_RS05420 (I6J32_05425) pilM 1087839..1088891 (-) 1053 WP_204156439.1 pilus assembly protein PilM Machinery gene
  I6J32_RS05425 (I6J32_05430) - 1089093..1091819 (+) 2727 WP_204156440.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28754.98 Da        Isoelectric Point: 9.6231

>NTDB_id=466580 I6J32_RS05410 WP_204156437.1 1086404..1087165(-) (pilO) [Moraxella osloensis strain FDAARGOS_1202]
MKLTNPLKRPRLVKKTVQITAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISSKREEIAAA
EAEQQTLLEQYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNVKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELTEEELKKAQKDNQKNP
AGSDNKEANNGDK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=466580 I6J32_RS05410 WP_204156437.1 1086404..1087165(-) (pilO) [Moraxella osloensis strain FDAARGOS_1202]
GTGAAATTAACCAATCCGCTAAAAAGACCAAGACTTGTCAAAAAAACCGTTCAAATTACCGCAAAAAAATCGTTTGATGT
TAAAGCCTTTACCGAAAGCTTTAAATCACTAGACCAAAACAATTATGGTAGCTGGCCTGTGCCTGTTAAGGTGACCGTCT
TGCTATTTATGGTCGCTGTTATCGCCTTTTTAACTTGGTTTTTACCGATTAGTAGCAAACGTGAGGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGCTTGAACAATATCGCCAAAAAGAATCCAAAGCACGTCATCTAAAAGAATATCAAGCGCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACCTAGTGGATG
GGATTAATATGGTTGGTGTGGGCAGTAATGTCAAATTTCAGGATATCAAAGTTGAGCCAGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGAGATTATCACCAATTTGGGTCATTCATTAGTGGGCTTGCTAAACTACC
TCGCATTATTACCTTACATGACTTTGAAGTCACCAACCCTAGTCCTAGCCTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTTAAAACTTATCGTTCAAAAGAGTTAACTGAAGAAGAATTGAAAAAGGCACAAAAAGATAATCAAAAAAATCCA
GCTGGGTCTGACAATAAGGAAGCAAATAATGGCGATAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

47.343

81.818

0.387
  comO/pilO Acinetobacter baylyi ADP1

46.5

79.051

0.368