Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HYH18_RS20080 Genome accession   NZ_CP058544
Coordinates   4042178..4042774 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain S161-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4037178..4047774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYH18_RS20065 helD 4037386..4039440 (-) 2055 WP_014907883.1 DNA helicase IV -
  HYH18_RS20070 - 4039565..4040011 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HYH18_RS20075 yccS 4040029..4042164 (+) 2136 WP_004147856.1 YccS family putative transporter -
  HYH18_RS20080 sxy/tfoX 4042178..4042774 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HYH18_RS20085 sulA 4043123..4043632 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  HYH18_RS20090 ompA 4043985..4045061 (+) 1077 WP_032432880.1 porin OmpA -
  HYH18_RS20095 matP 4045193..4045645 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HYH18_RS20100 - 4045831..4047588 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=464196 HYH18_RS20080 WP_004179217.1 4042178..4042774(-) (sxy/tfoX) [Klebsiella pneumoniae strain S161-2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=464196 HYH18_RS20080 WP_004179217.1 4042178..4042774(-) (sxy/tfoX) [Klebsiella pneumoniae strain S161-2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51