Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FY034_RS14710 Genome accession   NZ_CP058409
Coordinates   3169257..3170267 (-) Length   336 a.a.
NCBI ID   WP_265551844.1    Uniprot ID   -
Organism   Trichlorobacter lovleyi strain IAE     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3164257..3175267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY034_RS14690 (FY034_14700) - 3164391..3166373 (-) 1983 WP_265551835.1 CsgG/HfaB family protein -
  FY034_RS14695 (FY034_14705) - 3166370..3167566 (-) 1197 WP_265551837.1 flagellar assembly protein T N-terminal domain-containing protein -
  FY034_RS14700 (FY034_14710) - 3167615..3168079 (-) 465 WP_265551839.1 regulatory protein RecX -
  FY034_RS14705 (FY034_14715) - 3168066..3169229 (-) 1164 WP_265551842.1 type IV pilus twitching motility protein PilT -
  FY034_RS14710 (FY034_14720) recA 3169257..3170267 (-) 1011 WP_265551844.1 recombinase RecA Machinery gene
  FY034_RS14715 (FY034_14725) - 3170358..3170840 (-) 483 WP_265551847.1 CinA family protein -
  FY034_RS14720 (FY034_14730) larC 3170830..3172014 (-) 1185 WP_265551849.1 nickel pincer cofactor biosynthesis protein LarC -
  FY034_RS14725 (FY034_14735) larB 3172016..3172765 (-) 750 WP_265551851.1 nickel pincer cofactor biosynthesis protein LarB -
  FY034_RS14730 (FY034_14740) - 3172967..3174250 (+) 1284 WP_265551853.1 3-isopropylmalate dehydratase large subunit -
  FY034_RS14735 (FY034_14745) - 3174277..3174804 (+) 528 WP_265551855.1 3-isopropylmalate dehydratase small subunit -
  FY034_RS14740 (FY034_14750) - 3174903..3175088 (+) 186 WP_265551857.1 twin-arginine translocase TatA/TatE family subunit -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36241.80 Da        Isoelectric Point: 6.3036

>NTDB_id=464138 FY034_RS14710 WP_265551844.1 3169257..3170267(-) (recA) [Trichlorobacter lovleyi strain IAE]
MSDKNKAIELALSQIEKQFGKGAIMRLGNDEVLPGVESISTGAISLDLALGVGGVPRGRVIEVYGPESSGKTTLALHIVA
EAQKSGGIAAFVDAEHALDINYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIATLKQGDQVIGSR
TRVKVVKNKVAPPFKEAEFDILYGEGISRTGDVLDLAVDRNIIDKSGAWFSYNKERIGQGRENSRQFLKENPVMLAEIEA
KLMELIKPAPKEEKAE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=464138 FY034_RS14710 WP_265551844.1 3169257..3170267(-) (recA) [Trichlorobacter lovleyi strain IAE]
GTGAGTGATAAAAACAAGGCCATAGAGCTGGCACTTTCCCAGATTGAAAAGCAGTTTGGCAAAGGTGCCATCATGCGACT
CGGCAATGACGAGGTGCTGCCCGGTGTAGAGTCGATTTCAACCGGCGCCATCTCCCTTGACCTGGCCCTGGGGGTGGGCG
GTGTACCACGCGGCCGGGTGATTGAGGTCTATGGACCTGAATCCTCCGGCAAGACCACCCTGGCCCTGCATATTGTGGCT
GAAGCCCAGAAAAGTGGTGGTATTGCGGCTTTTGTGGATGCAGAGCATGCCCTGGATATCAATTATGCCCGCAAGCTGGG
GGTCAAGACCGATGACCTGCTGGTCTCCCAGCCGGACACCGGTGAGCAGGCGCTTGAGATTGCCGAAACCCTGGTGCGTA
GTGGTGCCATTGATGTGCTGGTGATTGACTCGGTTGCAGCCCTGGTTCCCAAGGCCGAGATTGAGGGTGAGATGGGGGAC
TCCCATGTCGGTCTGCAGGCCCGCCTGATGTCCCAGGCACTGCGTAAGCTGACCGGCATCATCTCCAAATCAAACTGCTG
CGTGATCTTTATCAACCAGATCAGGATGAAGATCGGCGTGATGTTTGGCAACCCTGAGACTACTACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTCCGGCTTGACATTCGTAAGATTGCCACCCTCAAACAGGGGGACCAGGTGATCGGTTCACGT
ACCCGGGTCAAGGTGGTCAAGAACAAGGTGGCGCCACCCTTTAAAGAGGCCGAGTTCGATATCCTCTATGGTGAAGGGAT
TTCCCGTACCGGTGACGTGCTGGATCTGGCGGTGGACCGCAATATCATCGACAAGAGCGGGGCCTGGTTCTCCTACAACA
AGGAACGGATCGGCCAGGGGCGCGAAAACTCACGTCAGTTCCTGAAGGAAAATCCGGTCATGCTGGCAGAGATAGAGGCC
AAGTTGATGGAGCTGATCAAGCCGGCCCCTAAGGAAGAAAAGGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.519

94.048

0.673
  recA Neisseria gonorrhoeae MS11

69.35

96.131

0.667
  recA Neisseria gonorrhoeae MS11

69.35

96.131

0.667
  recA Neisseria gonorrhoeae strain FA1090

69.35

96.131

0.667
  recA Helicobacter pylori 26695

65.875

100

0.661
  recA Helicobacter pylori strain NCTC11637

65.579

100

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.401

94.345

0.655
  recA Acinetobacter baylyi ADP1

68.323

95.833

0.655
  recA Glaesserella parasuis strain SC1401

66.667

97.321

0.649
  recA Acinetobacter baumannii D1279779

67.702

95.833

0.649
  recA Pseudomonas stutzeri DSM 10701

67.812

95.238

0.646
  recA Bacillus subtilis subsp. subtilis str. 168

66.049

96.429

0.637
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.123

96.429

0.628
  recA Vibrio cholerae strain A1552

65.123

96.429

0.628
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.11

97.024

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

98.214

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

63.75

95.238

0.607
  recA Streptococcus pyogenes NZ131

62.346

96.429

0.601
  recA Streptococcus pneumoniae R6

61.846

96.726

0.598
  recA Streptococcus mitis SK321

61.846

96.726

0.598
  recA Streptococcus pneumoniae Rx1

61.846

96.726

0.598
  recA Streptococcus pneumoniae D39

61.846

96.726

0.598
  recA Streptococcus pneumoniae TIGR4

61.846

96.726

0.598
  recA Streptococcus mutans UA159

61.728

96.429

0.595
  recA Streptococcus mitis NCTC 12261

61.538

96.726

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.923

96.726

0.589