Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JNE32_RS20255 Genome accession   NZ_CP068982
Coordinates   3839584..3840717 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain pb2441     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3834584..3845717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS20215 (JNE32_20115) ywnA 3834751..3835152 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  JNE32_RS20220 (JNE32_20120) ureC 3835287..3836996 (-) 1710 WP_029726053.1 urease subunit alpha -
  JNE32_RS20225 (JNE32_20125) ureB 3836993..3837367 (-) 375 WP_015251023.1 urease subunit beta -
  JNE32_RS20230 (JNE32_20130) ureA 3837364..3837681 (-) 318 WP_003227724.1 urease subunit gamma -
  JNE32_RS20235 (JNE32_20135) - 3837872..3838032 (-) 161 Protein_3942 hypothetical protein -
  JNE32_RS22655 - 3838304..3838472 (-) 169 Protein_3943 urea ABC transporter substrate-binding protein -
  JNE32_RS20245 (JNE32_20145) csbD 3838687..3838875 (-) 189 WP_003227718.1 stress response protein CsbD -
  JNE32_RS20250 (JNE32_20150) - 3838948..3839428 (-) 481 Protein_3945 hypothetical protein -
  JNE32_RS20255 (JNE32_20155) rapC 3839584..3840717 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  JNE32_RS20260 (JNE32_20160) moaA 3840909..3841934 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  JNE32_RS20265 (JNE32_20165) fdhD 3841950..3842738 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  JNE32_RS20270 (JNE32_20170) - 3842985..3843146 (-) 162 WP_003227706.1 hypothetical protein -
  JNE32_RS20275 (JNE32_20175) ywmD 3843241..3843915 (-) 675 WP_029726055.1 VWA domain-containing protein -
  JNE32_RS20280 (JNE32_20180) - 3843968..3844108 (-) 141 WP_003227702.1 hypothetical protein -
  JNE32_RS20285 (JNE32_20185) ywmC 3844239..3844922 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=464073 JNE32_RS20255 WP_003227715.1 3839584..3840717(-) (rapC) [Bacillus subtilis strain pb2441]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=464073 JNE32_RS20255 WP_003227715.1 3839584..3840717(-) (rapC) [Bacillus subtilis strain pb2441]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424