Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAOV_RS10260 Genome accession   NC_017337
Coordinates   2008601..2009026 (-) Length   141 a.a.
NCBI ID   WP_000934786.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2003601..2014026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS15465 - 2003783..2003968 (-) 186 WP_001187254.1 DUF3113 family protein -
  SAOV_RS10220 (SAOV_1947c) - 2003973..2004377 (-) 405 WP_000049813.1 DUF1064 domain-containing protein -
  SAOV_RS10225 (SAOV_1948c) - 2004388..2004609 (-) 222 WP_001123688.1 DUF3269 family protein -
  SAOV_RS10230 (SAOV_1949c) - 2004612..2004827 (-) 216 WP_001024402.1 hypothetical protein -
  SAOV_RS10235 (SAOV_1951c) - 2004824..2006064 (-) 1241 Protein_1947 DnaB helicase C-terminal domain-containing protein -
  SAOV_RS10240 (SAOV_1952c) - 2006061..2006417 (-) 357 WP_001132243.1 hypothetical protein -
  SAOV_RS10245 (SAOV_1953c) - 2006380..2007168 (-) 789 WP_000504925.1 phage replisome organizer N-terminal domain-containing protein -
  SAOV_RS10250 (SAOV_1954c) - 2007140..2007919 (-) 780 WP_000240902.1 AP2 domain-containing protein -
  SAOV_RS10255 (SAOV_1955c) - 2007919..2008587 (-) 669 WP_001121817.1 putative HNHc nuclease -
  SAOV_RS10260 (SAOV_1956c) ssbA 2008601..2009026 (-) 426 WP_000934786.1 single-stranded DNA-binding protein Machinery gene
  SAOV_RS10265 (SAOV_1957c) - 2009026..2009664 (-) 639 WP_001043063.1 ERF family protein -
  SAOV_RS10270 (SAOV_1958c) - 2009664..2010143 (-) 480 WP_000002514.1 siphovirus Gp157 family protein -
  SAOV_RS10275 (SAOV_1959c) - 2010136..2010372 (-) 237 WP_000802315.1 hypothetical protein -
  SAOV_RS10280 (SAOV_1960c) - 2010380..2010640 (-) 261 WP_000291075.1 DUF1108 family protein -
  SAOV_RS10285 (SAOV_1961c) - 2010734..2011054 (-) 321 WP_000219666.1 hypothetical protein -
  SAOV_RS10290 - 2011055..2011222 (-) 168 WP_000066006.1 DUF1270 domain-containing protein -
  SAOV_RS15595 (SAOV_1962c) - 2011206..2011352 (-) 147 WP_000230000.1 hypothetical protein -
  SAOV_RS10295 (SAOV_1963) - 2011402..2011614 (+) 213 WP_000461464.1 hypothetical protein -
  SAOV_RS15600 - 2011629..2011706 (-) 78 Protein_1961 hypothetical protein -
  SAOV_RS10300 (SAOV_1964c) - 2011719..2011982 (-) 264 WP_001124185.1 helix-turn-helix domain-containing protein -
  SAOV_RS15605 - 2012131..2012230 (-) 100 Protein_1963 hypothetical protein -
  SAOV_RS10310 (SAOV_1965c) - 2012243..2012956 (-) 714 WP_001157024.1 phage repressor protein -
  SAOV_RS10315 (SAOV_1966) - 2013013..2013222 (+) 210 WP_000772137.1 hypothetical protein -
  SAOV_RS10320 (SAOV_1967c) - 2013215..2013355 (-) 141 WP_000939495.1 hypothetical protein -
  SAOV_RS10325 (SAOV_1968c) - 2013370..2013815 (-) 446 Protein_1967 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15877.35 Da        Isoelectric Point: 4.6952

>NTDB_id=46308 SAOV_RS10260 WP_000934786.1 2008601..2009026(-) (ssbA) [Staphylococcus aureus subsp. aureus ED133]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNSNQQQNDNYQQQGQAQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=46308 SAOV_RS10260 WP_000934786.1 2008601..2009026(-) (ssbA) [Staphylococcus aureus subsp. aureus ED133]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACAAAATGACAATTATCAACAACAAGGACAAGCTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

81.308

75.887

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

53.947

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbA Streptococcus mutans UA159

45.217

81.56

0.369

Multiple sequence alignment