NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	JM964_RS10175	Genome accession	NZ_CP068708
Coordinates	2124539..2125633 (+)	Length	364 a.a.
NCBI ID	WP_044673842.1	Uniprot ID	-
Organism	Streptococcus suis strain ID33329
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2119539..2130633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM964_RS10150 (JM964_10150)	pgsA	2120058..2120597 (-)	540	WP_014736596.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
JM964_RS10155 (JM964_10155)	rodZ	2120607..2121464 (-)	858	WP_024400063.1	cytoskeleton protein RodZ	-
JM964_RS10160 (JM964_10160)	yfmH	2121546..2122829 (-)	1284	WP_044673836.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
JM964_RS10165 (JM964_10165)	yfmF	2122826..2124079 (-)	1254	WP_044673839.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
JM964_RS10170 (JM964_10170)	yaaA	2124153..2124536 (+)	384	WP_044673841.1	S4 domain-containing protein YaaA	-
JM964_RS10175 (JM964_10175)	recF	2124539..2125633 (+)	1095	WP_044673842.1	DNA replication/repair protein RecF	Machinery gene
JM964_RS10180 (JM964_10180)	guaB	2125902..2127383 (-)	1482	WP_015647590.1	IMP dehydrogenase	-
JM964_RS10185 (JM964_10185)	trpS	2127615..2128640 (-)	1026	WP_014736602.1	tryptophan--tRNA ligase	-
JM964_RS10190 (JM964_10190)	-	2128995..2129867 (+)	873	WP_015647591.1	YitT family protein	-

Sequence

Protein

Download Length: 364 a.a. Molecular weight: 42216.36 Da Isoelectric Point: 7.4360

                                >NTDB_id=460929 JM964_RS10175 WP_044673842.1 2124539..2125633(+) (recF) [Streptococcus suis strain ID33329]

MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK

VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR

NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRINFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT

ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ

IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

Download Length: 1095 bp

                                >NTDB_id=460929 JM964_RS10175 WP_044673842.1 2124539..2125633(+) (recF) [Streptococcus suis strain ID33329]

ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT

CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA

CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA

GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA

TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT

TTATCGATGTCGAGCTAGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA

AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG

TCGTGTTATCCAACATCGTATTAACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA

ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG

GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT

TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG

AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA

ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC

TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	69.806	99.176	0.692
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442

Detailed information NTG0460929