Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   JM964_RS08605 Genome accession   NZ_CP068708
Coordinates   1754883..1755923 (-) Length   346 a.a.
NCBI ID   WP_202847536.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749883..1760923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS10430 - 1750678..1750795 (-) 118 Protein_1656 translation initiation factor IF-2 N-terminal domain-containing protein -
  JM964_RS08575 (JM964_08575) - 1750813..1751121 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  JM964_RS08580 (JM964_08580) rnpM 1751108..1751404 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  JM964_RS08585 (JM964_08585) nusA 1751421..1752563 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  JM964_RS08590 (JM964_08590) rimP 1752636..1753106 (-) 471 WP_172005101.1 ribosome maturation factor RimP -
  JM964_RS08595 (JM964_08595) trmB 1753404..1754042 (-) 639 WP_024406557.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JM964_RS08600 (JM964_08600) ccrZ 1754039..1754833 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  JM964_RS08605 (JM964_08605) pptB 1754883..1755923 (-) 1041 WP_202847536.1 ABC transporter permease Regulator
  JM964_RS08610 (JM964_08610) pptA 1755920..1756654 (-) 735 WP_202847537.1 ABC transporter ATP-binding protein Regulator
  JM964_RS08615 (JM964_08615) - 1756717..1757130 (+) 414 WP_024385169.1 HIT family protein -
  JM964_RS08620 (JM964_08620) - 1757132..1757434 (+) 303 WP_015647347.1 hypothetical protein -
  JM964_RS08625 (JM964_08625) - 1757544..1758737 (-) 1194 WP_044668818.1 LCP family protein -
  JM964_RS08630 (JM964_08630) - 1758734..1759261 (-) 528 WP_202847538.1 GNAT family N-acetyltransferase -
  JM964_RS08635 (JM964_08635) tsaE 1759254..1759694 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40263.64 Da        Isoelectric Point: 10.0702

>NTDB_id=460914 JM964_RS08605 WP_202847536.1 1754883..1755923(-) (pptB) [Streptococcus suis strain ID33329]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIDLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=460914 JM964_RS08605 WP_202847536.1 1754883..1755923(-) (pptB) [Streptococcus suis strain ID33329]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACTAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTAGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGACCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTACCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.307

100

0.471
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462