Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   JM964_RS07705 Genome accession   NZ_CP068708
Coordinates   1573109..1573753 (+) Length   214 a.a.
NCBI ID   WP_202847522.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568109..1578753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS07680 (JM964_07680) - 1568755..1569918 (+) 1164 WP_202847450.1 IS30 family transposase -
  JM964_RS07685 (JM964_07685) - 1570237..1571016 (+) 780 WP_024384612.1 ABC transporter ATP-binding protein -
  JM964_RS07690 (JM964_07690) - 1571033..1571587 (-) 555 WP_024401709.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  JM964_RS07695 (JM964_07695) - 1571597..1572115 (-) 519 WP_024399663.1 TetR/AcrR family transcriptional regulator -
  JM964_RS07700 (JM964_07700) - 1572237..1573055 (+) 819 WP_024399662.1 cation diffusion facilitator family transporter -
  JM964_RS07705 (JM964_07705) cclA/cilC 1573109..1573753 (+) 645 WP_202847522.1 prepilin peptidase Machinery gene
  JM964_RS07710 (JM964_07710) - 1573861..1575321 (+) 1461 WP_024406672.1 nicotinate phosphoribosyltransferase -
  JM964_RS07715 (JM964_07715) nadE 1575334..1576158 (+) 825 WP_044679878.1 ammonia-dependent NAD(+) synthetase -
  JM964_RS07720 (JM964_07720) trpB 1576200..1577375 (-) 1176 WP_044681118.1 tryptophan synthase subunit beta -
  JM964_RS07725 (JM964_07725) - 1578195..1578722 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24267.32 Da        Isoelectric Point: 8.2861

>NTDB_id=460908 JM964_RS07705 WP_202847522.1 1573109..1573753(+) (cclA/cilC) [Streptococcus suis strain ID33329]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNTCKRQLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAA
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQFNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=460908 JM964_RS07705 WP_202847522.1 1573109..1573753(+) (cclA/cilC) [Streptococcus suis strain ID33329]
ATGAAAACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCACCCTCTAGTCACTGTAATACCTGCAAGCGACAGCTCAAGGCCTGGGATCTAATTCCAATCCTATCCC
AGCTTTCGACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCCTACTGGTATCTGGGACTAGAATTCTTAGCTGCG
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGTTAGTTTTAACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTAACTGAAAAATGGCAATTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.113

99.065

0.477
  cclA/cilC Streptococcus pneumoniae Rx1

47.573

96.262

0.458
  cclA/cilC Streptococcus pneumoniae D39

47.573

96.262

0.458
  cclA/cilC Streptococcus pneumoniae R6

47.573

96.262

0.458
  cclA/cilC Streptococcus pneumoniae TIGR4

47.087

96.262

0.453
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444