Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JKV48_RS08505 Genome accession   NZ_CP068682
Coordinates   1702468..1703094 (-) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain NCCP11854     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697468..1708094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS08485 (JKV48_08435) - 1698090..1698776 (+) 687 WP_000362218.1 DnaD domain-containing protein -
  JKV48_RS08490 (JKV48_08440) nth 1698766..1699425 (+) 660 WP_000253769.1 endonuclease III -
  JKV48_RS08495 (JKV48_08445) - 1699430..1699771 (+) 342 WP_000182018.1 YpoC family protein -
  JKV48_RS08500 (JKV48_08450) - 1700288..1702471 (-) 2184 WP_000138347.1 transglycosylase domain-containing protein -
  JKV48_RS08505 (JKV48_08455) recU 1702468..1703094 (-) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  JKV48_RS08510 (JKV48_08460) - 1703400..1703579 (+) 180 WP_001788819.1 hypothetical protein -
  JKV48_RS08515 (JKV48_08465) - 1703634..1703984 (+) 351 WP_001000801.1 YppE family protein -
  JKV48_RS08520 (JKV48_08470) - 1703977..1704540 (+) 564 WP_000241301.1 DUF1273 domain-containing protein -
  JKV48_RS08525 (JKV48_08475) gpsB 1704554..1704898 (+) 345 WP_001286320.1 cell division regulator GpsB -
  JKV48_RS08535 (JKV48_08485) - 1705550..1706695 (+) 1146 WP_000487150.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  JKV48_RS08540 (JKV48_08490) - 1706779..1707111 (+) 333 WP_000516799.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=460715 JKV48_RS08505 WP_001108885.1 1702468..1703094(-) (recU) [Staphylococcus aureus strain NCCP11854]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=460715 JKV48_RS08505 WP_001108885.1 1702468..1703094(-) (recU) [Staphylococcus aureus strain NCCP11854]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACACATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529