Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   JHS95_RS12120 Genome accession   NZ_CP068627
Coordinates   2500973..2504344 (-) Length   1123 a.a.
NCBI ID   WP_025508501.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2495973..2509344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS12100 (JHS95_12010) - 2496815..2497243 (+) 429 WP_180763396.1 HIT family protein -
  JHS95_RS12105 (JHS95_12015) - 2497361..2497591 (-) 231 WP_005455490.1 FeoC-like transcriptional regulator -
  JHS95_RS12110 (JHS95_12020) feoB 2497588..2499864 (-) 2277 WP_005486014.1 Fe(2+) transporter permease subunit FeoB -
  JHS95_RS12115 (JHS95_12025) - 2499864..2500091 (-) 228 WP_005455496.1 FeoA family protein -
  JHS95_RS12120 (JHS95_12030) tfoS 2500973..2504344 (-) 3372 WP_025508501.1 AraC family transcriptional regulator Regulator
  JHS95_RS12125 (JHS95_12035) znuA 2504555..2505433 (-) 879 WP_020904106.1 zinc ABC transporter substrate-binding protein ZnuA -
  JHS95_RS12130 (JHS95_12040) znuC 2505512..2506300 (+) 789 WP_237301770.1 zinc ABC transporter ATP-binding protein ZnuC -
  JHS95_RS12135 (JHS95_12045) znuB 2506293..2507078 (+) 786 WP_020904107.1 zinc ABC transporter permease subunit ZnuB -
  JHS95_RS12140 (JHS95_12050) sucD 2507216..2508088 (-) 873 WP_025534931.1 succinate--CoA ligase subunit alpha -
  JHS95_RS12145 (JHS95_12055) sucC 2508088..2509254 (-) 1167 WP_237301772.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126857.34 Da        Isoelectric Point: 5.4996

>NTDB_id=460177 JHS95_RS12120 WP_025508501.1 2500973..2504344(-) (tfoS) [Vibrio parahaemolyticus strain LH80]
MLRQLVLIFWGLFISSHAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQM
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDDVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
QKVSFPYLQVMAGHAVEHIALDDANRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQLAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIAEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDN
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=460177 JHS95_RS12120 WP_025508501.1 2500973..2504344(-) (tfoS) [Vibrio parahaemolyticus strain LH80]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCACGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTTT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGATGGCCAAAATGTTCTTCCAAAATCAGGCAGTTTTTTGCAAATG
ACCGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTCA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCTTTTTCACTGCTTCAACTGTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTTTGGTCGAAACCAAATGGGCGTTGGCTACAACATCAGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCTTCCGGTCAAAACTACATTGAAAAAGTGTATTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAGCTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGATGT
GCTTTGGTTTGCCGATGACCGCAAGCTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAGA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGCTTGGAGATATTCCAATTGGAAGGGCTG
CAAAAGGTCAGCTTCCCTTATTTACAAGTGATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACGCAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCCTATATGATACCGAAGATAAACTTTTTATTGGTACGGACCACGGCATT
TATGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGAGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTTGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACACTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGCGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTTTACTACCGCTTAAACGAAGACGACCGATGGCAGACTTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCAGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAACCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTAAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGACGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGTTAGAAGAGGGGCGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCTAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAACTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAAAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTCGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGCCGAAGAAAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTTTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAACTGCGGTTTCA
ATGATCCTTCTTACTTCAGCCAGAAGTTCAAGTTACACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAAT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.622

100

0.394