Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I6J13_RS09075 Genome accession   NZ_CP068213
Coordinates   1841666..1842298 (+) Length   210 a.a.
NCBI ID   WP_003070225.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836666..1847298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS09055 (I6J13_09055) - 1837098..1837838 (+) 741 WP_003028411.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  I6J13_RS09060 (I6J13_09060) stkP 1837835..1839718 (+) 1884 WP_003070235.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  I6J13_RS09065 (I6J13_09065) liaF 1839974..1840672 (+) 699 WP_003070232.1 cell wall-active antibiotics response protein LiaF -
  I6J13_RS09070 (I6J13_09070) - 1840669..1841664 (+) 996 WP_006270078.1 sensor histidine kinase -
  I6J13_RS09075 (I6J13_09075) vraR 1841666..1842298 (+) 633 WP_003070225.1 response regulator transcription factor Regulator
  I6J13_RS09080 (I6J13_09080) - 1842345..1843745 (+) 1401 WP_006270079.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  I6J13_RS09085 (I6J13_09085) - 1843747..1844139 (+) 393 WP_022524708.1 S1 RNA-binding domain-containing protein -
  I6J13_RS09090 (I6J13_09090) - 1844240..1845766 (-) 1527 WP_115342907.1 IS1182 family transposase -
  I6J13_RS09095 (I6J13_09095) - 1845951..1846268 (-) 318 WP_006269734.1 DUF960 domain-containing protein -
  I6J13_RS09100 (I6J13_09100) - 1846388..1846921 (-) 534 WP_003073655.1 DUF402 domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23618.22 Da        Isoelectric Point: 4.7982

>NTDB_id=459182 I6J13_RS09075 WP_003070225.1 1841666..1842298(+) (vraR) [Streptococcus constellatus strain FDAARGOS_1156]
MQILLVDDHEMVRLGLKSYLDLQDDVDVVAEASNGREGVEKALALRPDVIMMDIVMPEMSGIEATLAILKEWPEAKILIL
TSYLDNEKIYPVLDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEELTARERDILGLLAKGY
ENQRIADELFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHHLVPQDDI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=459182 I6J13_RS09075 WP_003070225.1 1841666..1842298(+) (vraR) [Streptococcus constellatus strain FDAARGOS_1156]
ATGCAGATTTTATTAGTAGATGACCATGAGATGGTACGACTTGGCTTGAAAAGTTATTTGGATTTACAAGATGATGTTGA
TGTAGTGGCAGAAGCTTCAAACGGTCGTGAAGGAGTTGAAAAAGCTTTAGCATTACGACCAGATGTTATTATGATGGATA
TTGTTATGCCTGAAATGAGTGGAATTGAAGCAACTCTAGCTATTTTAAAAGAATGGCCTGAAGCTAAGATTCTCATTCTG
ACTTCTTATTTGGATAATGAAAAAATTTACCCAGTTTTAGATGCAGGAGCTAAAGGATACATGCTTAAAACATCTAGTGC
TGACGATATCTTACGAGCAGTTCGAAAGGTAGCCAAGGGTGAACTTGCTATTGAAACAGAGGTCAGTCAGAAAGTGGAAT
ACCATCGAAATCATATTGAATTACATGAAGAGCTAACAGCGCGTGAGCGCGATATTTTAGGACTACTGGCGAAGGGGTAT
GAAAATCAACGCATAGCAGATGAGTTGTTTATTTCTTTAAAGACAGTGAAAACGCATGTGTCGAATATTTTGTCCAAATT
GGCAGTAAGTGATCGTACACAAGCTGTTGTCTATGCCTTCCAGCATCACCTCGTCCCACAGGATGATATTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.883

98.095

0.529
  degU Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.419