Detailed information NTG0045894

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: KSO_RS06505
• Genome accession: NC_020272
• Coordinates: 1276021..1276626 (+)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens IT-45
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1271021..1281626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSO_RS06480 (KSO_006610)	nadA	1271815..1272918 (+)	1104	WP_003152673.1	quinolinate synthase NadA	-
KSO_RS06485 (KSO_006615)	safA	1273045..1274250 (+)	1206	WP_014305504.1	SafA/ExsA family spore coat assembly protein	-
KSO_RS06490 (KSO_006620)	-	1274398..1274991 (+)	594	WP_003152677.1	YhcN/YlaJ family sporulation lipoprotein	-
KSO_RS20670	-	1275125..1275244 (+)	120	WP_024085651.1	hypothetical protein	-
KSO_RS06500 (KSO_006630)	-	1275377..1275886 (+)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
KSO_RS06505 (KSO_006635)	ruvA	1276021..1276626 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
KSO_RS06510 (KSO_006640)	ruvB	1276637..1277641 (+)	1005	WP_003152685.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KSO_RS06515 (KSO_006645)	-	1277634..1277834 (+)	201	WP_015387898.1	DUF2905 domain-containing protein	-
KSO_RS06520 (KSO_006650)	queA	1277860..1278888 (+)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
KSO_RS06525 (KSO_006655)	tgt	1278916..1280061 (+)	1146	WP_014305500.1	tRNA guanosine(34) transglycosylase Tgt	-
KSO_RS06530 (KSO_006660)	yajC	1280093..1280353 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
KSO_RS06535 (KSO_006665)	-	1280405..1280791 (-)	387	WP_003152697.1	TIGR04086 family membrane protein	-
KSO_RS06540 (KSO_006670)	-	1280958..1281614 (+)	657	WP_003152699.1	DUF421 domain-containing protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=45894 KSO_RS06505 WP_003152683.1 1276021..1276626(+) (ruvA) [Bacillus amyloliquefaciens IT-45]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=45894 KSO_RS06505 WP_003152683.1 1276021..1276626(+) (ruvA) [Bacillus amyloliquefaciens IT-45]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTTACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAAACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGACCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTTAGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408