Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HWV03_RS00205 Genome accession   NZ_CP056120
Coordinates   50481..51998 (-) Length   505 a.a.
NCBI ID   WP_211678005.1    Uniprot ID   -
Organism   Moritella sp. 36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 45481..56998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV03_RS00185 (HWV03_00185) - 45648..46637 (+) 990 WP_211678001.1 serine/threonine protein kinase -
  HWV03_RS00190 (HWV03_00190) - 46688..47311 (+) 624 WP_211678002.1 thiol:disulfide interchange protein DsbA/DsbL -
  HWV03_RS00195 (HWV03_00195) - 47383..49044 (-) 1662 WP_211678003.1 AMP-binding protein -
  HWV03_RS00200 (HWV03_00200) - 49505..50407 (-) 903 WP_211678004.1 acyltransferase -
  HWV03_RS00205 (HWV03_00205) comM 50481..51998 (-) 1518 WP_211678005.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HWV03_RS00210 (HWV03_00210) ilvG 52497..54155 (+) 1659 WP_211678006.1 acetolactate synthase 2 catalytic subunit -
  HWV03_RS00215 (HWV03_00215) ilvM 54145..54399 (+) 255 WP_211679927.1 acetolactate synthase 2 small subunit -
  HWV03_RS00220 (HWV03_00220) - 54530..55459 (+) 930 WP_211678007.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55310.13 Da        Isoelectric Point: 7.7054

>NTDB_id=458207 HWV03_RS00205 WP_211678005.1 50481..51998(-) (comM) [Moritella sp. 36]
MNLAVIYSRAILGINAPLITIEVHISEGLPGFTIVGLPETSVKEAKDRVRSALMNSNFMMPAKRITVNLGPADLPKEGSR
YDLPIAIAILIASQQITTNRHQQLEFIGELSLSGKLRTCRGTIPSIIAGKKAQRSTIIPFDNGHEAALIDNATCFTALDL
QQVCTHLTDQQTLPSAQRATAETITSASQHDMQDIIGQQSAKRALEICAAGNHNLLLFGPPGTGKTMLASRLTSIQPDMT
EQEALECAAIKSISGGEFVAQDWCRRPFRTPHHTSSAVALVGGGRNPRPGEITLAHNGVLFLDELPEYQRKALDSLREPL
EAGQITISRANQQVDFPANFQLIGALNPSPSGYYDNNKFGSNNSQVAKYLSKLSGPFLDRFDLTIEVPALPKGSLTEQGQ
RGENSEQIKQRVSAAQITQRQRSNKLNDALTSKEIEHYCPLQHQDAIFLELAIDKMGLSTRAFHKIIKVARTIADLNNCI
DINKSHLLEALSYRAMDRLLQQINV

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=458207 HWV03_RS00205 WP_211678005.1 50481..51998(-) (comM) [Moritella sp. 36]
ATGAATTTAGCCGTGATCTATAGCCGTGCGATTTTAGGTATCAACGCGCCTTTAATTACCATCGAAGTACACATCAGCGA
AGGACTACCAGGCTTTACCATTGTCGGCCTACCAGAAACATCAGTGAAAGAAGCCAAAGATCGCGTGCGAAGCGCATTAA
TGAACTCTAATTTTATGATGCCAGCCAAACGGATCACCGTCAATTTGGGACCCGCCGATCTACCAAAAGAAGGCAGCCGT
TATGACTTACCGATTGCTATCGCGATTTTAATCGCATCACAGCAAATCACGACCAATCGACACCAGCAATTAGAATTTAT
TGGTGAACTTTCATTATCCGGTAAGTTACGTACTTGCCGTGGCACAATCCCGAGTATCATCGCGGGTAAAAAAGCCCAAC
GCAGTACTATTATTCCATTCGATAATGGTCATGAAGCAGCACTTATCGACAATGCGACCTGTTTCACCGCTCTGGATTTA
CAACAAGTATGTACCCATTTAACGGATCAGCAAACATTACCATCGGCACAACGAGCCACAGCCGAAACGATAACATCCGC
CAGTCAACACGATATGCAAGACATTATCGGACAGCAAAGTGCCAAACGTGCCTTAGAGATCTGTGCAGCAGGTAATCATA
ATTTATTACTGTTTGGTCCTCCTGGAACAGGTAAAACCATGTTAGCCAGTCGCTTAACCAGTATTCAGCCTGATATGACA
GAACAAGAAGCACTCGAGTGTGCGGCGATAAAATCGATTAGTGGCGGCGAATTTGTCGCCCAAGATTGGTGCCGCCGCCC
TTTTCGAACCCCGCACCATACCTCCTCAGCCGTCGCGCTAGTCGGTGGCGGTCGAAACCCAAGACCGGGAGAAATAACTC
TCGCGCATAATGGCGTACTATTTTTAGACGAACTACCAGAATACCAGCGTAAAGCACTCGACTCTTTACGCGAACCTCTA
GAAGCAGGACAGATCACAATCTCCCGGGCCAACCAACAGGTCGACTTCCCCGCTAATTTCCAATTAATAGGCGCACTAAA
CCCATCGCCTTCAGGCTATTACGACAATAATAAATTTGGTAGCAACAATAGCCAAGTGGCAAAATATTTAAGCAAGTTAT
CAGGTCCCTTCTTAGACCGCTTTGATCTGACAATTGAAGTCCCCGCATTGCCAAAGGGCAGTTTAACGGAGCAAGGGCAG
CGCGGTGAAAACAGTGAACAAATTAAACAAAGGGTAAGTGCAGCACAAATAACTCAACGTCAACGCAGCAACAAATTAAA
CGACGCTTTGACCAGTAAAGAAATTGAACATTATTGCCCACTACAACATCAAGATGCGATATTTTTAGAACTGGCCATTG
ATAAAATGGGTCTATCTACGCGAGCATTTCATAAGATAATCAAGGTCGCTCGTACCATTGCAGATTTAAACAATTGTATA
GATATCAATAAATCCCACCTACTTGAAGCACTCTCCTATCGAGCGATGGACCGCTTATTACAACAAATAAATGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.218

100

0.582
  comM Glaesserella parasuis strain SC1401

57.988

100

0.582
  comM Vibrio campbellii strain DS40M4

58.25

99.604

0.58
  comM Haemophilus influenzae Rd KW20

56.41

100

0.566
  comM Legionella pneumophila str. Paris

47.4

99.01

0.469
  comM Legionella pneumophila strain ERS1305867

47.4

99.01

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.053

100

0.436