Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYNGTS_RS16390 Genome accession   NC_017277
Coordinates   3547589..3548653 (-) Length   354 a.a.
NCBI ID   WP_010874337.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3542589..3553653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTS_RS16370 (SYNGTS_3148) - 3542753..3544126 (-) 1374 WP_020861874.1 cyclic 2,3-diphosphoglycerate synthase -
  SYNGTS_RS16380 (SYNGTS_3149) - 3544425..3545948 (+) 1524 WP_223211313.1 family 10 glycosylhydrolase -
  SYNGTS_RS16385 (SYNGTS_3150) - 3546098..3547339 (+) 1242 WP_223211314.1 cyclic nucleotide-binding domain-containing protein -
  SYNGTS_RS16390 (SYNGTS_3151) recA 3547589..3548653 (-) 1065 WP_010874337.1 recombinase RecA Machinery gene
  SYNGTS_RS16395 (SYNGTS_3152) - 3548792..3550015 (+) 1224 WP_010874338.1 ABC transporter permease -
  SYNGTS_RS16400 (SYNGTS_3153) - 3550090..3550587 (-) 498 WP_010874339.1 transcriptional repressor -
  SYNGTS_RS16405 (SYNGTS_3154) - 3550730..3551551 (+) 822 WP_010874340.1 creatininase family protein -
  SYNGTS_RS16410 (SYNGTS_3155) purH 3551610..3553145 (+) 1536 WP_014407167.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37805.03 Da        Isoelectric Point: 4.8582

>NTDB_id=45813 SYNGTS_RS16390 WP_010874337.1 3547589..3548653(-) (recA) [Synechocystis sp. PCC 6803]
MASTNISDREKALNAALAQIERSFGKGAIMRLGDATQMRVETISTGALTLDLALGGGLPKGRIVEIYGPESSGKTTLALH
AVAATQQAGGVAAFVDAEHALDPVYSKALGVDIDNLLVAQPDNGESALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGE
MGDTSVGSQARLMSKAMRKIAGNIGRSGCLVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEGE
YGIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCTIDLAEKCEVITRKGAWYSYNGENIAQGRDNAMKYLEENPEIAA
TIDQQVREKLSLVNAVFPVETEDGAEEQGEDGDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=45813 SYNGTS_RS16390 WP_010874337.1 3547589..3548653(-) (recA) [Synechocystis sp. PCC 6803]
ATGGCCAGCACCAACATTTCCGACCGTGAAAAAGCCCTCAACGCCGCCCTAGCCCAGATTGAGCGGAGCTTCGGGAAGGG
AGCGATTATGCGCTTGGGAGATGCCACCCAAATGCGAGTTGAAACCATTTCCACTGGGGCTCTAACTTTGGATTTGGCCC
TGGGGGGCGGTTTGCCCAAGGGTCGGATTGTGGAAATTTACGGCCCGGAAAGTTCCGGGAAGACCACCTTGGCCCTCCAT
GCGGTGGCGGCCACCCAACAGGCGGGGGGAGTCGCGGCCTTTGTCGATGCAGAACACGCCCTTGACCCCGTTTATTCCAA
AGCCCTGGGGGTGGACATTGATAATTTATTGGTGGCCCAACCAGATAACGGCGAATCAGCCTTGGAAATTGTTGACCAGT
TGGTGCGTTCCACTGCGGTGGATATCATTGTGGTGGATTCCGTGGCGGCCCTAGTGCCCCGGGCGGAAATTGAAGGGGAA
ATGGGGGATACTTCGGTGGGTTCCCAAGCTCGCTTGATGAGTAAAGCCATGCGGAAAATTGCTGGTAATATCGGGCGATC
GGGTTGTTTGGTAATTTTCCTCAACCAGTTACGGCAAAAAATTGGTGTGACCTACGGCAGTCCCGAAGTGACCACCGGAG
GTAATGCCCTGAAATTCTACGCCTCCGTACGTTTAGATATTCGCCGCATTCAAACCCTGAAAAAAGGCACCGAAGGGGAA
TACGGTATCCGAGCCAAAGTGAAAGTGGCTAAAAACAAAGTGGCTCCCCCCTTCCGCATCGCTGAATTTGACATTATTTT
TGGCCAGGGCATTTCCCGCATGGGTTGCACCATCGACCTGGCGGAAAAATGCGAAGTCATCACCCGCAAAGGGGCTTGGT
ATAGCTATAACGGCGAAAACATTGCCCAGGGTCGGGATAATGCCATGAAATATTTAGAGGAAAATCCTGAAATCGCCGCT
ACCATCGACCAACAGGTGCGGGAAAAATTATCTTTAGTTAATGCGGTTTTCCCGGTGGAAACAGAGGATGGAGCGGAAGA
GCAGGGGGAAGATGGGGATTTTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.158

96.61

0.61
  recA Pseudomonas stutzeri DSM 10701

65.046

92.938

0.605
  recA Acinetobacter baumannii D1279779

62.353

96.045

0.599
  recA Ralstonia pseudosolanacearum GMI1000

62.763

94.068

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

91.525

0.588
  recA Vibrio cholerae strain A1552

64.198

91.525

0.588
  recA Glaesserella parasuis strain SC1401

60.997

96.328

0.588
  recA Neisseria gonorrhoeae MS11

64.286

90.96

0.585
  recA Neisseria gonorrhoeae MS11

64.286

90.96

0.585
  recA Neisseria gonorrhoeae strain FA1090

64.286

90.96

0.585
  recA Streptococcus mutans UA159

57.225

97.74

0.559
  recA Streptococcus pneumoniae R6

59.159

94.068

0.556
  recA Streptococcus pneumoniae Rx1

59.159

94.068

0.556
  recA Streptococcus pneumoniae D39

59.159

94.068

0.556
  recA Streptococcus pneumoniae TIGR4

59.159

94.068

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

59.394

93.22

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

57.864

95.198

0.551
  recA Streptococcus mitis SK321

58.559

94.068

0.551
  recA Streptococcus mitis NCTC 12261

58.559

94.068

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.185

96.328

0.551
  recA Helicobacter pylori strain NCTC11637

57.567

95.198

0.548
  recA Helicobacter pylori 26695

57.567

95.198

0.548
  recA Streptococcus pyogenes NZ131

58.232

92.655

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.229

93.785

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.143

92.938

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.242

93.22

0.506

Multiple sequence alignment