Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   C663_RS13240 Genome accession   NC_020244
Coordinates   2646626..2647630 (-) Length   334 a.a.
NCBI ID   WP_015384253.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2641626..2652630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS13210 (C663_2608) yrbG 2642600..2643256 (-) 657 WP_015483509.1 DUF421 domain-containing protein -
  C663_RS13215 (C663_2609) - 2643454..2643843 (+) 390 WP_015483510.1 TIGR04086 family membrane protein -
  C663_RS13220 (C663_2610) yajC 2643900..2644166 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  C663_RS13225 (C663_2611) tgt 2644203..2645348 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  C663_RS13230 (C663_2612) queA 2645375..2646403 (-) 1029 WP_015384251.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C663_RS13235 (C663_2613) yrzS 2646433..2646633 (-) 201 WP_015384252.1 DUF2905 domain-containing protein -
  C663_RS13240 (C663_2614) ruvB 2646626..2647630 (-) 1005 WP_015384253.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  C663_RS13245 (C663_2615) ruvA 2647641..2648246 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  C663_RS13250 (C663_2616) bofC 2648385..2648897 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  C663_RS13255 (C663_2617) csbX 2648945..2650252 (-) 1308 WP_015483512.1 MFS transporter -
  C663_RS13260 (C663_2618) iolG 2650323..2651348 (-) 1026 WP_015483513.1 inositol 2-dehydrogenase -
  C663_RS13265 (C663_2619) yrzF 2651586..2652233 (+) 648 WP_015483514.1 phosphotransferase -
  C663_RS21385 - 2652279..2652401 (-) 123 WP_003229707.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37494.81 Da        Isoelectric Point: 5.2944

>NTDB_id=45806 C663_RS13240 WP_015384253.1 2646626..2647630(-) (ruvB) [Bacillus subtilis XF-1]
MDERLGSREADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=45806 C663_RS13240 WP_015384253.1 2646626..2647630(-) (ruvB) [Bacillus subtilis XF-1]
ATGGATGAACGGCTCGGCTCAAGGGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCCATTGTAGCCAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTGATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

99.401

100

0.994
  ruvB Streptococcus pneumoniae R6

60.856

97.904

0.596
  ruvB Streptococcus pneumoniae D39

60.856

97.904

0.596
  ruvB Streptococcus pneumoniae TIGR4

60.856

97.904

0.596
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.439

98.204

0.515

Multiple sequence alignment