Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLIJ_RS12570 Genome accession   NC_017219
Coordinates   2724476..2726314 (-) Length   612 a.a.
NCBI ID   WP_012578653.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719476..2731314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLIJ_RS15325 - 2719961..2720338 (+) 378 WP_012578650.1 hypothetical protein -
  BLIJ_RS12550 (BLIJ_2500) rsmI 2720365..2721375 (-) 1011 WP_041982173.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BLIJ_RS12555 (BLIJ_2502) - 2721806..2722942 (+) 1137 WP_012577358.1 IS256-like element ISBlo17 family transposase -
  BLIJ_RS12565 (BLIJ_2503) - 2723299..2724324 (+) 1026 WP_012578652.1 FAD:protein FMN transferase -
  BLIJ_RS12570 (BLIJ_2504) rcrQ 2724476..2726314 (-) 1839 WP_012578653.1 ABC transporter ATP-binding protein Regulator
  BLIJ_RS12575 (BLIJ_2505) rcrP 2726382..2728253 (-) 1872 WP_012578654.1 ABC transporter ATP-binding protein Regulator
  BLIJ_RS12580 (BLIJ_2506) - 2728489..2729019 (-) 531 WP_012578655.1 MarR family transcriptional regulator -
  BLIJ_RS12585 (BLIJ_2507) - 2729173..2730696 (-) 1524 WP_012578656.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 66960.39 Da        Isoelectric Point: 6.5046

>NTDB_id=45616 BLIJ_RS12570 WP_012578653.1 2724476..2726314(-) (rcrQ) [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYIRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMTHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=45616 BLIJ_RS12570 WP_012578653.1 2724476..2726314(-) (rcrQ) [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGCCTGCCCGCCATCGTCAACGGCAGGCCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACGCTGGTGGCCCTGTACGCGGGATATGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCACA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTACTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATCTCCGG
CGGCTCGATTGCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGACCCACGGCGATGTGATCGAACG
CGGCACCCATGACGAGCTGCTGGCTGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.082

96.078

0.52

Multiple sequence alignment