Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HMPREF9228_RS09305 Genome accession   NC_017218
Coordinates   2201125..2202993 (-) Length   622 a.a.
NCBI ID   WP_014484405.1    Uniprot ID   -
Organism   Bifidobacterium breve ACS-071-V-Sch8b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2196125..2207993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9228_RS09290 (HMPREF9228_1926) - 2196691..2198109 (-) 1419 WP_014484403.1 MFS transporter -
  HMPREF9228_RS09295 (HMPREF9228_1927) - 2198214..2199155 (+) 942 WP_003832382.1 FAD:protein FMN transferase -
  HMPREF9228_RS09300 (HMPREF9228_1928) rcrQ 2199164..2200993 (-) 1830 WP_014484404.1 ABC transporter ATP-binding protein Regulator
  HMPREF9228_RS09305 (HMPREF9228_1929) rcrP 2201125..2202993 (-) 1869 WP_014484405.1 ABC transporter ATP-binding protein Regulator
  HMPREF9228_RS09310 (HMPREF9228_1930) - 2203177..2203697 (-) 521 Protein_1854 MarR family winged helix-turn-helix transcriptional regulator -
  HMPREF9228_RS10505 - 2204323..2204535 (+) 213 WP_230454659.1 DUF1684 domain-containing protein -
  HMPREF9228_RS09315 (HMPREF9228_1931) - 2204623..2206146 (-) 1524 WP_014484406.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68179.79 Da        Isoelectric Point: 5.0371

>NTDB_id=45611 HMPREF9228_RS09305 WP_014484405.1 2201125..2202993(-) (rcrP) [Bifidobacterium breve ACS-071-V-Sch8b]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTEQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=45611 HMPREF9228_RS09305 WP_014484405.1 2201125..2202993(-) (rcrP) [Bifidobacterium breve ACS-071-V-Sch8b]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACACCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTTCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTGATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCAAAGACCGAGCAGACCGGCACCGTGGAATTCAGGAACGT
GAGCTTTACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTGTCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAATATCAGCTATGGCGACAAGCCCGGCGAGAACGACGCGGTCGAACTCGCGGATA
CCTCCACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGACAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.259

100

0.49

Multiple sequence alignment