Detailed information NTG0455096

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HUT26_RS20380
• Genome accession: NZ_CP054868
• Coordinates: 4457409..4458737 (-)
• Length: 442 a.a.
• NCBI ID: WP_124303645.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain PCLAR04
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4452409..4463737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT26_RS20365 (HUT26_20370)	-	4452774..4455842 (+)	3069	WP_124373536.1	PilC/PilY family type IV pilus protein	-
HUT26_RS20370 (HUT26_20375)	-	4455856..4456257 (+)	402	WP_009050937.1	type IV pilin protein	-
HUT26_RS20375 (HUT26_20380)	thiO	4456312..4457412 (+)	1101	WP_063433073.1	glycine oxidase ThiO	-
HUT26_RS20380 (HUT26_20385)	pilR	4457409..4458737 (-)	1329	WP_124303645.1	sigma-54 dependent transcriptional regulator	Regulator
HUT26_RS20385 (HUT26_20390)	-	4459012..4459245 (-)	234	WP_124303643.1	PP0621 family protein	-
HUT26_RS20390 (HUT26_20395)	-	4459380..4460402 (-)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
HUT26_RS20395 (HUT26_20400)	rluD	4460555..4461517 (+)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HUT26_RS20400 (HUT26_20405)	pgeF	4461514..4462239 (+)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48888.25 Da
• Isoelectric Point: 8.9622

>NTDB_id=455096 HUT26_RS20380 WP_124303645.1 4457409..4458737(-) (pilR) [Pseudomonas chlororaphis strain PCLAR04]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=455096 HUT26_RS20380 WP_124303645.1 4457409..4458737(-) (pilR) [Pseudomonas chlororaphis strain PCLAR04]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462