Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IGS65_RS05570 Genome accession   NZ_CP066294
Coordinates   1141338..1141931 (+) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans strain 27-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136338..1146931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05540 (IGS65_005540) luxS 1136390..1136872 (+) 483 WP_192072086.1 S-ribosylhomocysteine lyase Regulator
  IGS65_RS05545 (IGS65_005545) - 1137033..1138673 (-) 1641 WP_019319065.1 cell division site-positioning protein MapZ family protein -
  IGS65_RS05550 (IGS65_005550) - 1138689..1139843 (-) 1155 WP_192072085.1 class I SAM-dependent RNA methyltransferase -
  IGS65_RS05560 (IGS65_005560) gpsB 1140293..1140631 (-) 339 WP_002263050.1 cell division regulator GpsB -
  IGS65_RS05565 (IGS65_005565) - 1140737..1141258 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -
  IGS65_RS05570 (IGS65_005570) recU 1141338..1141931 (+) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  IGS65_RS05575 (IGS65_005575) pbp1a 1141924..1144155 (+) 2232 WP_002272847.1 penicillin-binding protein PBP1A -
  IGS65_RS05580 (IGS65_005580) pepC 1144263..1145597 (-) 1335 WP_192072084.1 aminopeptidase C -
  IGS65_RS05585 (IGS65_005585) nadE 1145710..1146534 (-) 825 WP_002285375.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=454596 IGS65_RS05570 WP_002263052.1 1141338..1141931(+) (recU) [Streptococcus mutans strain 27-3]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=454596 IGS65_RS05570 WP_002263052.1 1141338..1141931(+) (recU) [Streptococcus mutans strain 27-3]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCCAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
TGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATCTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503