Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   I6I02_RS05680 Genome accession   NZ_CP066093
Coordinates   1286786..1287442 (+) Length   218 a.a.
NCBI ID   WP_198463230.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281786..1292442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS05650 (I6I02_05650) - 1282075..1282344 (-) 270 WP_002890660.1 DUF3165 family protein -
  I6I02_RS05655 (I6I02_05655) typA 1282364..1284214 (-) 1851 WP_002884130.1 translational GTPase TypA -
  I6I02_RS05660 (I6I02_05660) - 1284355..1285323 (-) 969 WP_037600464.1 ROK family glucokinase -
  I6I02_RS05665 (I6I02_05665) - 1285298..1285522 (-) 225 WP_037600461.1 YqgQ family protein -
  I6I02_RS05670 (I6I02_05670) - 1285630..1286067 (-) 438 WP_198463229.1 Fur family transcriptional regulator -
  I6I02_RS05675 (I6I02_05675) - 1286155..1286676 (-) 522 WP_037600458.1 Dps family protein -
  I6I02_RS05680 (I6I02_05680) cclA/cilC 1286786..1287442 (+) 657 WP_198463230.1 prepilin peptidase Machinery gene
  I6I02_RS05685 (I6I02_05685) - 1287472..1288863 (-) 1392 WP_198463231.1 serine hydrolase -
  I6I02_RS05690 (I6I02_05690) sodA 1288962..1289567 (-) 606 WP_049545964.1 superoxide dismutase SodA -
  I6I02_RS05695 (I6I02_05695) holA 1289663..1290697 (-) 1035 WP_198463232.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25192.38 Da        Isoelectric Point: 8.1563

>NTDB_id=453775 I6I02_RS05680 WP_198463230.1 1286786..1287442(+) (cclA/cilC) [Streptococcus salivarius strain FDAARGOS_1045]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSHCKHQLRFSEMIPILSQLFLRSRCRSCQSPIPFRYLFMEIFCG
IICLLYFYNFLSLEVTYFLYFSLCLSIFDLKQKSYPLLFWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=453775 I6I02_RS05680 WP_198463230.1 1286786..1287442(+) (cclA/cilC) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCCATTGCAAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGTCTCCTATCCCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
ATAATATGTCTTCTATATTTCTATAACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGTTCTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAATATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCCTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTTCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

98.165

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.785

98.165

0.381