Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H74_RS04070 Genome accession   NZ_CP066069
Coordinates   814804..815412 (-) Length   202 a.a.
NCBI ID   WP_003060942.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 809804..820412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS04055 (I6H74_04050) nadE 810269..811093 (+) 825 WP_003055492.1 ammonia-dependent NAD(+) synthetase -
  I6H74_RS04060 (I6H74_04055) pepC 811274..812605 (+) 1332 WP_012767435.1 aminopeptidase C -
  I6H74_RS04065 (I6H74_04060) pbp1a 812652..814817 (-) 2166 WP_046176776.1 penicillin-binding protein PBP1A -
  I6H74_RS04070 (I6H74_04065) recU 814804..815412 (-) 609 WP_003060942.1 Holliday junction resolvase RecU Machinery gene
  I6H74_RS04075 (I6H74_04070) - 815493..816008 (+) 516 WP_003056762.1 DUF1273 domain-containing protein -
  I6H74_RS04080 (I6H74_04075) gpsB 816130..816456 (+) 327 WP_003060950.1 cell division regulator GpsB -
  I6H74_RS04090 (I6H74_04085) - 816901..818055 (+) 1155 WP_046177471.1 class I SAM-dependent RNA methyltransferase -
  I6H74_RS04095 (I6H74_04090) - 818069..819550 (+) 1482 WP_014612513.1 cell division site-positioning protein MapZ family protein -
  I6H74_RS04100 (I6H74_04095) - 819664..820146 (-) 483 WP_003061594.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23336.95 Da        Isoelectric Point: 9.9487

>NTDB_id=453547 I6H74_RS04070 WP_003060942.1 814804..815412(-) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=453547 I6H74_RS04070 WP_003060942.1 814804..815412(-) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5