Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6H74_RS00925 Genome accession   NZ_CP066069
Coordinates   184949..185377 (-) Length   142 a.a.
NCBI ID   WP_046177415.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179949..190377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS00890 (I6H74_00890) - 180357..181037 (-) 681 WP_012766451.1 type II CAAX endopeptidase family protein -
  I6H74_RS00895 (I6H74_00895) - 181140..181346 (-) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  I6H74_RS00900 (I6H74_00900) - 181652..182848 (-) 1197 WP_015057203.1 acetate kinase -
  I6H74_RS00905 (I6H74_00905) comGH 182907..183860 (-) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  I6H74_RS00910 (I6H74_00910) comGG 183923..184246 (-) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  I6H74_RS00915 (I6H74_00915) comGF 184275..184715 (-) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6H74_RS00920 (I6H74_00920) comGE 184696..184941 (-) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6H74_RS00925 (I6H74_00925) comGD 184949..185377 (-) 429 WP_046177415.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6H74_RS00930 (I6H74_00930) comGC 185352..185678 (-) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  I6H74_RS00935 (I6H74_00935) comGB 185680..186711 (-) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6H74_RS00940 (I6H74_00940) comGA/cglA 186647..187588 (-) 942 WP_014611930.1 competence type IV pilus ATPase ComGA Machinery gene
  I6H74_RS00945 (I6H74_00945) - 187669..188034 (-) 366 WP_003055257.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16440.98 Da        Isoelectric Point: 9.9660

>NTDB_id=453511 I6H74_RS00925 WP_046177415.1 184949..185377(-) (comGD) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MRLKNCNLKAFTMLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLIIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=453511 I6H74_RS00925 WP_046177415.1 184949..185377(-) (comGD) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAATAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

38.235

95.775

0.366