Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6H78_RS05535 Genome accession   NZ_CP066059
Coordinates   1136946..1137608 (+) Length   220 a.a.
NCBI ID   WP_198459047.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131946..1142608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS05510 (I6H78_05510) tsf 1132334..1133374 (+) 1041 WP_000808056.1 translation elongation factor Ts -
  I6H78_RS05515 (I6H78_05515) cysK 1133478..1134404 (-) 927 WP_061853334.1 cysteine synthase A -
  I6H78_RS05520 (I6H78_05520) - 1134501..1134944 (-) 444 WP_084922193.1 PH domain-containing protein -
  I6H78_RS05525 (I6H78_05525) - 1134959..1135594 (-) 636 WP_198459045.1 YigZ family protein -
  I6H78_RS05530 (I6H78_05530) comFA/cflA 1135651..1136949 (+) 1299 WP_198459046.1 DEAD/DEAH box helicase Machinery gene
  I6H78_RS05535 (I6H78_05535) comFC/cflB 1136946..1137608 (+) 663 WP_198459047.1 ComF family protein Machinery gene
  I6H78_RS05540 (I6H78_05540) hpf 1137688..1138236 (+) 549 WP_198459048.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6H78_RS05545 (I6H78_05545) tnpA 1138433..1138897 (+) 465 WP_198459049.1 IS200/IS605 family transposase -
  I6H78_RS05550 (I6H78_05550) - 1139074..1140252 (+) 1179 WP_198460230.1 acetyl-CoA C-acetyltransferase -
  I6H78_RS05555 (I6H78_05555) - 1140399..1142372 (+) 1974 WP_198459050.1 DHH family phosphoesterase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24881.93 Da        Isoelectric Point: 8.1486

>NTDB_id=453464 I6H78_RS05535 WP_198459047.1 1136946..1137608(+) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_1021]
MNCLLCGQTTKGELTFSSLFLLKDDCSYLCSDCASSFEKIGENYCPNCMKTGMSTKCQDCKLWCKEGVWVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFAPVLAEELKKYKGYQFVVIPLSPGRLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=453464 I6H78_RS05535 WP_198459047.1 1136946..1137608(+) (comFC/cflB) [Streptococcus oralis strain FDAARGOS_1021]
ATGAATTGTTTACTATGTGGCCAGACTACAAAGGGTGAGCTTACTTTTAGTAGTCTCTTCCTTTTGAAGGATGACTGCAG
TTATCTTTGTTCAGATTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAATTATTGCCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAGTTTGGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGCTATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTTTTTGCTCCTGTTCTTGCTGA
GGAGCTGAAAAAGTATAAAGGTTATCAATTTGTTGTAATTCCCCTAAGTCCTGGAAGATTGCTTGAGAGGGGGTTCAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTGGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

80

100

0.8
  comFC/cflB Streptococcus pneumoniae TIGR4

79.091

100

0.791
  comFC/cflB Streptococcus mitis SK321

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae D39

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae R6

79.091

100

0.791
  comFC/cflB Streptococcus pneumoniae Rx1

79.091

100

0.791
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364