Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   I6H76_RS06980 Genome accession   NZ_CP065994
Coordinates   1365589..1365816 (+) Length   75 a.a.
NCBI ID   WP_006531867.1    Uniprot ID   A0ABP2DHC7
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360589..1370816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS06960 (I6H76_06960) - 1361096..1362490 (-) 1395 WP_006531862.1 bacteriocin secretion accessory protein -
  I6H76_RS06965 (I6H76_06965) comA/nlmT 1362502..1364649 (-) 2148 WP_043878344.1 peptide cleavage/export ABC transporter Regulator
  I6H76_RS06970 (I6H76_06970) - 1364924..1365181 (+) 258 WP_006531864.1 bacteriocin class II family protein -
  I6H76_RS06975 (I6H76_06975) - 1365199..1365393 (+) 195 WP_043878345.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6H76_RS06980 (I6H76_06980) cipB 1365589..1365816 (+) 228 WP_006531867.1 Blp family class II bacteriocin Regulator
  I6H76_RS06985 (I6H76_06985) - 1365818..1366006 (+) 189 WP_115283782.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6H76_RS06990 (I6H76_06990) - 1366475..1366633 (+) 159 WP_006531869.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  I6H76_RS06995 (I6H76_06995) - 1366661..1366816 (+) 156 WP_006531870.1 bacteriocin -
  I6H76_RS07000 (I6H76_07000) - 1366856..1367530 (+) 675 WP_006531871.1 CPBP family intramembrane glutamic endopeptidase -
  I6H76_RS07005 (I6H76_07005) - 1367871..1368173 (+) 303 WP_006531872.1 hypothetical protein -
  I6H76_RS07010 (I6H76_07010) - 1368252..1368455 (+) 204 WP_081442276.1 garvicin Q family class II bacteriocin -
  I6H76_RS07015 (I6H76_07015) - 1368467..1368769 (+) 303 WP_006531874.1 bacteriocin immunity protein -
  I6H76_RS07020 (I6H76_07020) cipB 1368927..1369160 (+) 234 WP_006531875.1 Blp family class II bacteriocin Regulator
  I6H76_RS07025 (I6H76_07025) - 1369180..1369368 (+) 189 WP_006531876.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6H76_RS07030 (I6H76_07030) - 1370118..1370336 (+) 219 WP_006531878.1 Blp family class II bacteriocin -
  I6H76_RS07035 (I6H76_07035) - 1370336..1370632 (+) 297 WP_006531879.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 7180.18 Da        Isoelectric Point: 3.8150

>NTDB_id=452831 I6H76_RS06980 WP_006531867.1 1365589..1365816(+) (cipB) [Streptococcus infantarius strain FDAARGOS_1019]
MNTLAFEQFDVMNEVDLSAVEGGYSAGACLTDIGLGMVGGGAAGVAGGVAGIALGVALGQIGGNVRCITSYVGGK

Nucleotide


Download         Length: 228 bp        

>NTDB_id=452831 I6H76_RS06980 WP_006531867.1 1365589..1365816(+) (cipB) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAATACATTAGCATTTGAACAATTTGATGTAATGAACGAAGTAGACCTTTCAGCTGTAGAAGGTGGGTATAGTGCAGG
TGCATGTTTAACTGACATTGGATTAGGAATGGTTGGTGGTGGTGCTGCAGGTGTAGCTGGTGGTGTTGCAGGAATTGCTC
TCGGAGTTGCTCTTGGACAAATTGGTGGTAATGTAAGATGTATTACAAGTTATGTTGGAGGAAAGTAG

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

54

66.667

0.36