Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JAN99_RS09020 Genome accession   NZ_CP065927
Coordinates   1846686..1847792 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain emm9ST603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841686..1852792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS09000 (JAN99_08995) hasA 1842364..1843623 (+) 1260 WP_030126164.1 hyaluronan synthase HasA -
  JAN99_RS09005 (JAN99_09000) hasB 1843659..1844867 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  JAN99_RS09010 (JAN99_09005) hasC 1845049..1845963 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  JAN99_RS09015 (JAN99_09010) yaaA 1846271..1846684 (+) 414 WP_030126163.1 S4 domain-containing protein YaaA -
  JAN99_RS09020 (JAN99_09015) recF 1846686..1847792 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  JAN99_RS09025 (JAN99_09020) - 1847847..1848710 (-) 864 WP_002992310.1 GRP family sugar transporter -
  JAN99_RS09030 (JAN99_09025) guaB 1848913..1850394 (-) 1482 WP_136116361.1 IMP dehydrogenase -
  JAN99_RS09035 (JAN99_09030) trpS 1850702..1851724 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=452070 JAN99_RS09020 WP_011185108.1 1846686..1847792(+) (recF) [Streptococcus pyogenes strain emm9ST603]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=452070 JAN99_RS09020 WP_011185108.1 1846686..1847792(+) (recF) [Streptococcus pyogenes strain emm9ST603]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465